Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0790 ATGAAAATGTCGTTTGGCAAGGAAGTGTTCCTCCTAATTCTATGTTGTTTTTCCTTGATCTGTTTTAGTTCCTCAATGCGGAGGCATTACAAATTTGTTGTCGAGGAAGCCCTGTATACAAGACTCTGTTCAACAAAAAGCATATTGACAGTGAATGGAGAATTCCCAGGGCCAACTATTAGAGTCCACAAGGGTGATACAGTCTATGTCAATGTTCATAACAAGGGCAAACACAACATCACTTTACACTGGCATGGAGTGAAGCAGCCAAGGAATCCATGGACAGATGGTCCTCAATACATCACACAGTGTCCTATTCAACCAGGAGGGAAATTCAGGCAGAAGATTATTTTTTCATCAGAGGAAGGGACCTTGTGGTGGCATGCTCATAGTGATTGGATAAGAGCAACTGTTCATGGGGCTATCATTATCTATCCAAGAAGGCATAGTAACTACCCTTTCCCCCAACCTGATGCAGAGGTGCCCATCATATTTGGAGAGTGGTGGAAGAATGATGTGAACAAGGTCTACAGAGAATCTGTTGAAACTGGAGGAGACCCAAATGTATCTGATGCCATCACTATAAATGGTCAACCAGGGGATCTGTACCCTTGCTCAAAATCAGAAACATTCAAGTTGAATGTAGACCAAGGCAACTTATATCTTCTCCGCATCATCAATGCCGCAATGAACCTTATTCTCTTTTTCTCCGTTTCCAAACACAAACTCACTGTCATCGGTGCCGATGCCGCGTACACCAAACCAATTACAAATGATTATATCTGCATATCTCCAGGACAAACAATGGATGTATTGTTGTATGCCAATCAAGAACCTAATGACTACTACATGGCTGCTAGGGCATATTCAAGTGGATTTAGAGTCCCCTTCACTAACTCCACAGCCACTGCTAGAATTCAATATTCTGAAAATTATTACTACACTCCACCATCAACATCATCATGTCCTCCATTACCTTATCTTCCCAACTACAATGACACACGGGCAGCTTTCAACTTCATTACCAGCATTAGAGGGTTACCTCATGAAAACGCTCATGAAGTCCCCAAAATTATCACCACTCACATAGTGACCACTGTTTCTGTCAACACCTTTCCTTGTCCTAGAGGCAAATCATGCATGGGTCCAAATGGAAATATTTTCGCTGCAAGCATGAACAACATAAGTTTTAAAACCCCTAGCTATGACATACTAGAAGCCTATTACTACCATATCCATGGGGTGTTCAGAAAGGGGTTTCCCAAGTTTCCTCCATTCGTGTTTAACTTCATTGCAGATTCTTTGCCTGTGACGCTGAACACGCCGAAGCGTGGGACTAAAGTTGTTGTTGTGAAGTATGGTGCAACTGTGGAAGTTGTTTTCCAAGGGACAAATTTGCTTTCAGGGCTTGACCATCCTATGCATCTCCATGGATTTAGTTTCCATGTTGTTGGATATGGATTTGGCAATTTCAATAAAAGGAAGAGCCCCATGTATTACAATCTCATTGATCCTCCCCTTCTCAATACAGTGATTGTACCTAAAAATGGCTGGGCTGCCATAAGGTTCGTGGCCGACAACCCAGGAGTGTGGTTCATGCACTGCCATCTTGAACGGCACCTCTCTTGGGGAATGGAGACAGTGTTTATTGTGAAGAATGGAAAATCCTCACATGCAAAGTTACTACCTCCACCACCAGATATGCCTCCATGTTGA 1716 0.4277 MKMSFGKEVFLLILCCFSLICFSSSMRRHYKFVVEEALYTRLCSTKSILTVNGEFPGPTIRVHKGDTVYVNVHNKGKHNITLHWHGVKQPRNPWTDGPQYITQCPIQPGGKFRQKIIFSSEEGTLWWHAHSDWIRATVHGAIIIYPRRHSNYPFPQPDAEVPIIFGEWWKNDVNKVYRESVETGGDPNVSDAITINGQPGDLYPCSKSETFKLNVDQGNLYLLRIINAAMNLILFFSVSKHKLTVIGADAAYTKPITNDYICISPGQTMDVLLYANQEPNDYYMAARAYSSGFRVPFTNSTATARIQYSENYYYTPPSTSSCPPLPYLPNYNDTRAAFNFITSIRGLPHENAHEVPKIITTHIVTTVSVNTFPCPRGKSCMGPNGNIFAASMNNISFKTPSYDILEAYYYHIHGVFRKGFPKFPPFVFNFIADSLPVTLNTPKRGTKVVVVKYGATVEVVFQGTNLLSGLDHPMHLHGFSFHVVGYGFGNFNKRKSPMYYNLIDPPLLNTVIVPKNGWAAIRFVADNPGVWFMHCHLERHLSWGMETVFIVKNGKSSHAKLLPPPPDMPPC* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0790 571 ProSitePatterns Multicopper oxidases signature 2. 534 545 IPR002355 GO:0005507
Lja5g0790 571 SUPERFAMILY Cupredoxins 23 171 IPR008972 -
Lja5g0790 571 Pfam Multicopper oxidase 160 311 IPR001117 -
Lja5g0790 571 SUPERFAMILY Cupredoxins 154 348 IPR008972 -
Lja5g0790 571 Gene3D - 157 348 IPR008972 -
Lja5g0790 571 Pfam Multicopper oxidase 441 554 IPR011706 GO:0005507|GO:0016491
Lja5g0790 571 CDD CuRO_2_LCC_plant 161 308 IPR034285 -
Lja5g0790 571 ProSitePatterns Multicopper oxidases signature 1. 529 549 IPR033138 -
Lja5g0790 571 Gene3D - 21 146 IPR008972 -
Lja5g0790 571 CDD CuRO_1_LCC_plant 30 146 IPR034288 GO:0005507
Lja5g0790 571 PANTHER MULTI-COPPER OXIDASE 33 571 IPR045087 -
Lja5g0790 571 TIGRFAM laccase: laccase 28 571 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lja5g0790 571 SUPERFAMILY Cupredoxins 382 571 IPR008972 -
Lja5g0790 571 Pfam Multicopper oxidase 35 148 IPR011707 GO:0005507
Lja5g0790 571 PANTHER LACCASE-15 33 571 - -
Lja5g0790 571 CDD CuRO_3_LCC_plant 415 554 IPR034289 GO:0005507
Lja5g0790 571 Gene3D - 379 571 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0790 Lja-Chr5 7302933 7305837 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0790 K05909 K19791 gmx:100808617 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0790 5 7302933 7305837 Lja5g0790 5 7302933 7305837 ECH