Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0714 ATGATCACCTTCACCAGACGAATTCACCATCATCTCCACCCCACTGCATCACCACAAGGACAATGGCTCCGCCGCACGTTCTGCCTGTGGTCATCAAAGAAGGACCCAGACCTGGAAACGGCACTCTCACGCAACCGGCGGTGGGTGGTGAACAACCAGATCAAGAACATCATCCTCCGCTACCCTAACAACGAGATCCCCATTGAAGCCCTCCAGAAGAAGTTCAAAACCCTCGATCTTCAAGGCAAAGCCCTCAACTGGGTTTCCAAGTACCCTTGCTGCTTCGACGTCCACCAACGCCGTTGCCGCCTCACCAAACGCATGATGAGCCTCGTCGACGAGGAATTGTCCCTCAAGGACTCCCTCGAACCGGTTTTCGTTCGCCGATTGGCCAAGCTCTTGATGATGTCTTTCAACAAGAGGCTCAATGTTCTCAAAATCAATGAATTCAAGCGTAATTTCGGGTTCCCGGATGATTACTTGATTAGGATCGTGCCGAAGTATCCTGATTTGTTCCGAATTGTGAGTGAGAGTGGGAGGAGGAGTTCCATGGAGGTTGAGTTGTTGCATTGGGACCCTGATTTCGCGGTTTCCGCGGTTGAGGGTTTGGCGCGGAAGAATGGCGATGGCGCGGAGCCGGGATTTTCGTGTTTGTTGCCTTTGAGCTGGGTGAAATCGTGGGAGAGGTTTCACAAATTCGAATCGGTTCCTTATGTTTCGCCTTACTCGGATCCGAGAGGCTTGGTGGAGGGTTCGAAGGAGATGGAGAAGAGGAATGTGGGTTTGGTGCATGAGTTGTTGTCATTGACTCTTTGGAAGAAGTGCTCAATTGTGAAGCTTGGTCATTTTAGGAGGGAGTTTCTTTTGCCTGATAGGTTGAATGTGTTGTTGCTCAAGCACCCTGGGATATTCTATGTTTCCAATAAGTATAAGATTTACACTGTTCTGCTTAGAGAGGCTTATGTCGGGTCGCAACTCGTGGAGAAGGATCCTTTGGTGGTTGTGAAGGAGAAATTTGGGGAACTGATGCAGGAGGGACTTCATGAGTATAATCAAAGGCGGCGCATCCGCAATCTGGAAAAGAGGAGGACGAAAGGTGTTCCCTTTGCTAGAGCGGATGAAACGAAGGGTGGAAGGAGGAGAAGCCGTGAAAATTCTGATGATGATGATGACGAAAATAGTCGCGTGAGAGGGTTGCTTGACCCGGAAGAGAGAAAACGGTTTTATAAAGCTCTCTTTGATGATGATGATTCATGA 1257 0.4932 MITFTRRIHHHLHPTASPQGQWLRRTFCLWSSKKDPDLETALSRNRRWVVNNQIKNIILRYPNNEIPIEALQKKFKTLDLQGKALNWVSKYPCCFDVHQRRCRLTKRMMSLVDEELSLKDSLEPVFVRRLAKLLMMSFNKRLNVLKINEFKRNFGFPDDYLIRIVPKYPDLFRIVSESGRRSSMEVELLHWDPDFAVSAVEGLARKNGDGAEPGFSCLLPLSWVKSWERFHKFESVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKCSIVKLGHFRREFLLPDRLNVLLLKHPGIFYVSNKYKIYTVLLREAYVGSQLVEKDPLVVVKEKFGELMQEGLHEYNQRRRIRNLEKRRTKGVPFARADETKGGRRRSRENSDDDDDENSRVRGLLDPEERKRFYKALFDDDDS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0714 418 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 17 406 IPR045040 GO:0003723
Lja5g0714 418 MobiDBLite consensus disorder prediction 364 399 - -
Lja5g0714 418 Pfam Plant organelle RNA recognition domain 33 346 IPR021099 GO:0003723
Lja5g0714 418 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 17 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0714 Lja-Chr5 6524709 6526621 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0714 - - gmx:100814115 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0714 5 6524709 6526621 Lja5g0714 5 6524709 6526621 ECH