Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0692 ATGGCTTCCCTCACACAAGTTTCAGTCCTATTATTATTCCCTCTATTCCTCATTTCCCTCTTCAAGTCCTCCCATGCTGCTGGCATTGCTGTCTACTGGGGCCAAAACACAGGTGAGGGCTCCCTGGAAGATGCTTGCAACACTGGCAACTACCAATTTGTGAACATAGCATTCCTGTCCACATTTGGCAACGGGGCTACCCCACAAATAAACCTTGCTGGCCACTGTGATGCAACCACCAATGGGTGCTCCAAGTTCAGCTCTGAGATCAAAACATGCCAAGGCAAAGGCATCAAAGTGCTTCTCTCATTAGGAGGTGGTGCTGGAAGCTACTCTCTCAACTCAGCTGATGAAGCCACACAGCTTGCAAACTACTTGTGGGACAATTTCCTTGGTGGGAGTTCAAATTCAAGGCCACTGGGTGATGCTGTGTTGGATGGCATAGATTTTGACATTGAGGCTGGTGGAGCACACTTTGATGAACTTGCAAGGGCACTTAAACAACACAATGTGATCTTAGCTGCAGCACCACAGTGTCCTTACCCTGATGCTCATTTGGACTCTGCTATCAAAACAGGGCTTTTTGATCATGTCTGGGTTCAGTTCTACAACAACCCTCAATGCCAGTACTCTAGAGGGAACACTAACAATCTTCTAAATTCATGGAAACAGTGGACTGACGTTAGTGAAATTAAGCAAGTGTTTTTGGGGTTACCAGCTTCTGAAGGTGCTGCTCCTAGTGGGGGTTTTGTTCCTGCTGATGTGCTGAACTCTCAGGTTCTTCCTTCTGTCAAGAGTTCTCCTAAGTATGGTGGAGTCATGCTTTGGGACAGGTTCAATGATGGCCAAAACGGATACAGTACTGCTATTAAGGGCAGTGTCTGA 885 0.4689 MASLTQVSVLLLFPLFLISLFKSSHAAGIAVYWGQNTGEGSLEDACNTGNYQFVNIAFLSTFGNGATPQINLAGHCDATTNGCSKFSSEIKTCQGKGIKVLLSLGGGAGSYSLNSADEATQLANYLWDNFLGGSSNSRPLGDAVLDGIDFDIEAGGAHFDELARALKQHNVILAAAPQCPYPDAHLDSAIKTGLFDHVWVQFYNNPQCQYSRGNTNNLLNSWKQWTDVSEIKQVFLGLPASEGAAPSGGFVPADVLNSQVLPSVKSSPKYGGVMLWDRFNDGQNGYSTAIKGSV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0692 294 CDD GH18_hevamine_XipI_class_III 27 292 IPR045321 -
Lja5g0692 294 SUPERFAMILY (Trans)glycosidases 25 290 IPR017853 -
Lja5g0692 294 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 27 294 IPR001223 GO:0005975
Lja5g0692 294 Pfam Glycosyl hydrolases family 18 29 281 IPR001223 GO:0005975
Lja5g0692 294 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 145 153 IPR001579 GO:0004553|GO:0005975
Lja5g0692 294 Gene3D Glycosidases 27 294 - -
Lja5g0692 294 PANTHER ACIDIC ENDOCHITINASE 14 294 - -
Lja5g0692 294 PANTHER ENDOCHITINASE 14 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0692 Lja-Chr5 6230088 6231726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0692 1 294 Glycoside Hydrolase AT5G24090 54.785 5.52e-117 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0692 K01183 - gmx:100783329 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0692 5 6230088 6231726 Lja5g0692 5 6230088 6231726 ECH