Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0690 ATGGCCAAAAACTCCCATGCTCTGTTTTCTGCTCTGTTTTTTGTCCTCCTGATCGGAGCCTCCCATGCCGGTGGCGGCATAGCCATCTACTGGGGCCAAAACGGCAACGAGGGAACCCTCTCTGAAGCCTGCGCCACCGGAAAATACTCCCATGTCATCATAGCCTTCCTCAACAAGTTCGGCAATGGCCAAACCCCTGAAATGAACCTCGCCGGTCACTGCAACCCAGCTACCAACTCCTGCACCAAGTTCAGTGCAGACATCAAGGACTGCCAGAGAAGAGGAATCAAAGTGCTTCTCTCTATCGGTGGTGGAATCGGAAGCTACTCTCTGTCCTCCCCTAAAGATGCAAGAACAGTTGCAACCTTTTTGTGGAACACTTTCTTAGGGGGCAAGTCAACTTCAAGGCCATTAGGTGATGCTGTGTTGGATGGCATTGATTTCGACATTGAACTTGGATCAACACAAAATTGGGAGCATCTTGCACGTTTTCTCAAGGGTTATGGAAAAAGAGTGTACCTTGGTGCTGCACCTCAGTGTCCAATTCCTGATAAGTTCTTAGGCACTGCACTTGAAACAGGACTTTTTGACTTTGTTTGGGTTCAGTTCTATAATAATCCTCCATGTCAATATGCTAATGGGAACATCACTAATCTTGTGAATTCATGGAACCGTTGGACGAGTTCTGTTCATGCTGGGAAGATATTTTTGGGGTTGCCGGCGGCTCCGGCGGCGGCGGGAAGCGGTTATATTCCGGCTGATGTGTTGAGTTCTCAAATATTGCCGGTGATAAAAAAGTCAACGAAGTATGGTGGGGTGATGCTTTGGTCAAGGTTCTATGATGGGCAGAATGGGTATAGTGATTCCATTATTAGCAGCGTGTGA 885 0.4791 MAKNSHALFSALFFVLLIGASHAGGGIAIYWGQNGNEGTLSEACATGKYSHVIIAFLNKFGNGQTPEMNLAGHCNPATNSCTKFSADIKDCQRRGIKVLLSIGGGIGSYSLSSPKDARTVATFLWNTFLGGKSTSRPLGDAVLDGIDFDIELGSTQNWEHLARFLKGYGKRVYLGAAPQCPIPDKFLGTALETGLFDFVWVQFYNNPPCQYANGNITNLVNSWNRWTSSVHAGKIFLGLPAAPAAAGSGYIPADVLSSQILPVIKKSTKYGGVMLWSRFYDGQNGYSDSIISSV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0690 294 PANTHER ACIDIC ENDOCHITINASE 6 294 - -
Lja5g0690 294 PANTHER ENDOCHITINASE 6 294 - -
Lja5g0690 294 Gene3D Glycosidases 25 294 - -
Lja5g0690 294 Pfam Glycosyl hydrolases family 18 27 281 IPR001223 GO:0005975
Lja5g0690 294 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 25 294 IPR001223 GO:0005975
Lja5g0690 294 CDD GH18_hevamine_XipI_class_III 25 292 IPR045321 -
Lja5g0690 294 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 143 151 IPR001579 GO:0004553|GO:0005975
Lja5g0690 294 SUPERFAMILY (Trans)glycosidases 24 290 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0690 Lja-Chr5 6201085 6202586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0690 1 294 Glycoside Hydrolase AT5G24090 64.667 1.76e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0690 K01183 - gmx:100818728 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0690 5 6201085 6202586 Lja5g0690 5 6201085 6202586 ECH