Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0686 ATGATGATGGAGTACGCAGAGGAACTGGTGAGGGAGTTTCTGGTGTTCCGAGGATTCACCAACACGCTCGAAGCTTACGAGACCGAATTGCGAACCGACATTGGTAAAGGGTTCCAGGTCGACAAGATTCTCGACCTCATCTTCTCCGTCTATGTTCCCAAGTTTCAGGGTGAGAAGTTGGTTGCGCTTCTCGGTTTCTTCAAACACTATGTCTCTTCAAGTTCTGAAACCGCACTTGTTTCAACGTTGTCGAAGTTGGAAGCTTCTATTCTGCGATTCTATGTTGTTTATGCTTTGCAGTCCAATCGGAGAGACAAGGTTGTGGAGTTTTTCGCTGCTAATGGTGCTGAATTGGTGCAGAGTTCTCAGGATTGGACTCACTGGTTTGCAATTCCTTATACCAAGAATCCGCAAACCGATCCAGAATTTCGAACATTTTTCTCCAAGGAGTGGTATCAGGCATTGCATCTTTCTGTTAGAAACTTCTTTAGTGAGATCTTCAATGCTACTCGTCTACCTGCTCTACTGAAGATCAGTTCAGAGATGAATGCTACCAACCTACTCAAAAGAGATATCGTACATCTAAATCATAAATTGTCGCAGCTTCAGGCTTTACTCGATGAGAAAGAGGCACAATTATGCCAATTTAGAAGTTTGGAAGGAAGTATTAGTTCATCAAGCAATTTGCGTGAAGAAAGTACCCATATGTCAGAAGATTCTCCGAAGGTTTATCCAAGAGGAGTTCAAAAAGAGATTAGCCAAGATTCTATTGTTGATAGACCTGGATATGTTCAGTCTGAGATTATCAGCTCCAAGTCAGAAAATGAAAGAGAAGTTTATGGGGAAGAAGATTTTGCTGAGGTCAAAGTGGAGCACCAGGAGACATTTTTGGGGCACACCAGTCCAATCACCCGGTGCCGCTTCTCTACATCTGGAAACAACATTGCTAGTGCCTCTCTGGATGGAACTGTCAGGATATGGACATATGATGCATCAACTCCAGTATCTAGAAATGCAACCATATATTGTGGCACCGAAATTTTGTCGCTTGACTGGGAATGTAAATCAGACCGCTTGCTTCTAATAGGTACATCTGATGGGTGCATTAAAGCTTGGAATGTGGATGCAAAGAGAGTTGTTTGTGACCTTAACACAACAGAAGAATTTCCAAGTGTGTTGGACATAAAGTGCAGTCCCGTTGAACCTATTTTCGTGTCTGCAGCAGCTTCTAGAGGGGCTGGTTCCAACTATCCTCACAACCTGGGTTTCGCTTCACTAACTGTGTGGAACATGAAGACGTGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGATCCACCAGCAATTACTTCTCTATGCTTCAATCACAATGGGAAGATTTTAGCAGCATCTGCTGTGGATGGAATGATTCACATGTTTGACATGTCTGCTGGTCTACAAATCACTGGCTGGCCTGCACATGATTCTTCTATCAGTTCAATTTTTTTTGGACCAGATGAGACTAGCATTTTTAGCCTGGGCTCTGATGGGAAGATTTTCGAGTGGAGTTTGCAAAATCAAGGTCAAATCTTGTGGTCAAGAGACTGTAGCAGGTTCTGTTCCCCCCTCAGTGCTTCAAAATATAGCAGACATGAGATGGCATTAGATGCAAATGGGAGGAGACTCTTGGTAACATCCAGTTCTGTTAGAGCACCCATATATCAGGTTCAGGGTAATTTGACTGGTTGGAGAACACTTCCTCACGGTGCTCCTATTACCGCTGTAGATTGGCATCCGACATTACCCATTTTCTTGACTGGATCAGCTGATAACTCTGTCCGAGTAACATCTTTGTTATCATAG 1842 0.4349 MMMEYAEELVREFLVFRGFTNTLEAYETELRTDIGKGFQVDKILDLIFSVYVPKFQGEKLVALLGFFKHYVSSSSETALVSTLSKLEASILRFYVVYALQSNRRDKVVEFFAANGAELVQSSQDWTHWFAIPYTKNPQTDPEFRTFFSKEWYQALHLSVRNFFSEIFNATRLPALLKISSEMNATNLLKRDIVHLNHKLSQLQALLDEKEAQLCQFRSLEGSISSSSNLREESTHMSEDSPKVYPRGVQKEISQDSIVDRPGYVQSEIISSKSENEREVYGEEDFAEVKVEHQETFLGHTSPITRCRFSTSGNNIASASLDGTVRIWTYDASTPVSRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLNTTEEFPSVLDIKCSPVEPIFVSAAASRGAGSNYPHNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSSISSIFFGPDETSIFSLGSDGKIFEWSLQNQGQILWSRDCSRFCSPLSASKYSRHEMALDANGRRLLVTSSSVRAPIYQVQGNLTGWRTLPHGAPITAVDWHPTLPIFLTGSADNSVRVTSLLS* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0686 613 SMART WD40_4 477 516 IPR001680 GO:0005515
Lja5g0686 613 SMART WD40_4 433 474 IPR001680 GO:0005515
Lja5g0686 613 SMART WD40_4 572 610 IPR001680 GO:0005515
Lja5g0686 613 SMART WD40_4 289 328 IPR001680 GO:0005515
Lja5g0686 613 SMART WD40_4 334 373 IPR001680 GO:0005515
Lja5g0686 613 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 578 613 - -
Lja5g0686 613 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 296 327 - -
Lja5g0686 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 337 IPR001680 GO:0005515
Lja5g0686 613 SUPERFAMILY WD40 repeat-like 288 608 IPR036322 GO:0005515
Lja5g0686 613 Gene3D - 419 612 IPR015943 GO:0005515
Lja5g0686 613 MobiDBLite consensus disorder prediction 227 246 - -
Lja5g0686 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 613 IPR001680 GO:0005515
Lja5g0686 613 Coils Coil 192 212 - -
Lja5g0686 613 Pfam WD domain, G-beta repeat 581 608 IPR001680 GO:0005515
Lja5g0686 613 Pfam WD domain, G-beta repeat 293 327 IPR001680 GO:0005515
Lja5g0686 613 Gene3D - 188 413 IPR015943 GO:0005515
Lja5g0686 613 PANTHER OS05G0299300 PROTEIN 3 611 - -
Lja5g0686 613 Pfam Anaphase-promoting complex subunit 4 WD40 domain 443 496 IPR024977 -
Lja5g0686 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 484 519 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0686 K24760 - gmx:100788591 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0686 5 6163380 6175231 Lja5g0686 5 6163380 6175231 ECH