Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0675 ATGCTATGTAAAACAGCTTCTCATAGTTTTTCTCCATGCCGCCTTCAAGAAACTTGCTTGCGGGTTCTTTCTTTCTGCAACTCAAACTCCCTCAAAGAAGGGGTATGTGTTCACAGCCCCATTATCAAACTGGGTTTAGAAGATGACTTGTATTTGAACAACAATTTGCTGTCTTTGTATGCTAAATGCTATGGAGTTCGACAAGCACGCTATCTATTCGAAGAAATGCCGTACAGAGATGTTGTGTCCTGGACAACTATTCTGTCTGCTCATACCAAGAATAAGCATCATTTTGAGGCCCTTGAGTTGTTTGAAATGATGCTGGGTTCTGGTCAGAACCCGAACGAGTTCACCTTGTCGAGTGCCTTGAGATCATGTTCTGCTTTGGGGGAGATTGAGTGTGGTGCTCAAATTCATGCCTCTGTTGTGAAGATTCGGTTAGAGGTGAATCCGGTTCTGGGAACTTCGTTGATTGAGTTATACACCAAGTGGGATTGTACTGTGGACACGTACAAATTGCTTGAATTTGTGAAGGGTGGTGATATTGTGTCATGGACAACGATGATCTCTTCTTTAATTGAAACTAGTAAATGGAGTGAAGCTCTAGAAATCTATGGCAAGATGATTGAAACGGGTGTTTGTCCAAACGAGTTCACATTTGTTAAACTCTTAGGCTTGTCTTCTTTTCTTGGTTTGGGTTATGGGAAGCTACTACATGCACAGTTAATCAGATTTGGTATTGGAATGAATTTGGTGTTGAAAACCGCCATTGTTGACATGTATTCCAAATGCAGACGGATGGAAGATGCAATTAAGGTCTCCAACCTGACAACCGAATATGATGTGTGCTTGTGGACCACCATTATCTCTGGATTTACCCAAAATTTGCAGGTTAGAGAGGCTGTCAATGCATTTCTTGATATGGAATTGTCTGGAATCCTACCAAATAATTTTACATATGCTAGTTTATTGAATGCTAGCTCCTCAATTTTATCATTGGGCCTGGGGGAACAGTTTCATTCACGGGTTATCATAATTGGACTGGAGGATGATATATATGTGGGAAATGCACTGGTGGATATGTACATGAAATGCTCCAGCATCACAAAAGGTGCAGTGAAAGCTTTTAGAGCGATAGCCTCACCAAATGTCATATCTTGGACTTCTTTGATTGCTGGCTTAGCAGAACATGGATTTGAAAAAGAATCTTTTCAGTTGTTTGCTGAGATGCAAGCAGCAGGAGTGCAACCAGATTCCTATACTCTATCTACTGTTCTTGTAGCTTGCAGCAATATAAAGTCTCTTGTTCAAACTATGAAACTCCATGGACATATTATAAAAACAAAAGCAGACATTGATATAGCTGTTGGGAATGCTCTTGTAGATGCTTATGCTAGAGGGGGAATGGCGGAGGAAGCATGGTCTGTTATTGGCATGATGAATCATAGAGATCCCATCACATACACAAGTTTAGCTGCAAGATTAAACCAGAGGGGCGATCATGACATGGCATTAAAAATAGTGACTCGCATGTGCAATGATGAGGTTAAGATGGACGAATTCAGCTTGGCGAGTTTTCTATCAGCTGCAGCTGGCTTAGGGACTATGGGAACCGGAAAGCAGCTACATTGCTATTCTGTCAAAACAGGTTTTGAGAGATGTAACTCAGTTTCAAACAGCTTAGTTCACTTGTACAGCAAGTGCGGTAGTATGCACGATGCAAAGAGAGCTTTCAAAGAGATAACTGAGCCAAATGAAGTTTCATGGAACGGTTTGATATCAGGATTGGTATCAAATGGACAAACATCCCATGCTCTTTATGCCTTTGATGAAATGAGGTTAGCAGGAGTCAGACCTGATTCTGTCACATTCATGTCACTGATTTCTGCTTGCAGCCATGGTGGTTTATTGGATCAGGGCCTTGAGTATTTCTATTCTATGGAAAAAGCATACCATATAAAACCAAAATTGGATCATTACGTGTGTTTAGTTGATCTCCTTGGTAGAGGTGGTCGCGTAGAGGAAGCTATGGGAGTTATTGAAACAATGCCCTTCGAGCCGGACGCCATAATTTGTAAAACTTTATTAAATGCTTGCAAGTTACATGGAAATGTTGCCCTAGGAGAAGATATGGCAAGGCAATGTCTTGAGCTTGATCCATCTGATCCTGCAATATATTTGCTGCTTGCAAACTTGTATGACAGTGCAGGACTCAATGATTTCGGAGATAAAACTCGCAAGCTGATGAGAGAAAGAGGTTTAAGGAGAAGTCCTGGGCAGTGCTGGATGGAGGTAAGAAGCAAGATTCATAACTTCTCTGCTAGAGAGAAGATTGATGAGAATGAGATTACTCAAAAACTGGAGTTTATTATAACTGAATTTAAGAATAGAGGGTATCCTTACCAAGAGAATGAAGATAAGTTGTACCATTCAGAGCAATTAGCCTTTGCATTTGGTCTTCTTAATGTACCAACTATGGCTCCAATACGCATAAACAAAAATTCACTGATATGCCCTCACTGCCATACTTTTGTAATGTTGGCCACACAAGTAGTTCGTAGGGAGTTAATTGTGAGGGATAGGAGACGGTTGCATTTCTTTAAGGATGGCCAGTGTTCATGCAGAGGTCACTCTTAA 2637 0.4092 MLCKTASHSFSPCRLQETCLRVLSFCNSNSLKEGVCVHSPIIKLGLEDDLYLNNNLLSLYAKCYGVRQARYLFEEMPYRDVVSWTTILSAHTKNKHHFEALELFEMMLGSGQNPNEFTLSSALRSCSALGEIECGAQIHASVVKIRLEVNPVLGTSLIELYTKWDCTVDTYKLLEFVKGGDIVSWTTMISSLIETSKWSEALEIYGKMIETGVCPNEFTFVKLLGLSSFLGLGYGKLLHAQLIRFGIGMNLVLKTAIVDMYSKCRRMEDAIKVSNLTTEYDVCLWTTIISGFTQNLQVREAVNAFLDMELSGILPNNFTYASLLNASSSILSLGLGEQFHSRVIIIGLEDDIYVGNALVDMYMKCSSITKGAVKAFRAIASPNVISWTSLIAGLAEHGFEKESFQLFAEMQAAGVQPDSYTLSTVLVACSNIKSLVQTMKLHGHIIKTKADIDIAVGNALVDAYARGGMAEEAWSVIGMMNHRDPITYTSLAARLNQRGDHDMALKIVTRMCNDEVKMDEFSLASFLSAAAGLGTMGTGKQLHCYSVKTGFERCNSVSNSLVHLYSKCGSMHDAKRAFKEITEPNEVSWNGLISGLVSNGQTSHALYAFDEMRLAGVRPDSVTFMSLISACSHGGLLDQGLEYFYSMEKAYHIKPKLDHYVCLVDLLGRGGRVEEAMGVIETMPFEPDAIICKTLLNACKLHGNVALGEDMARQCLELDPSDPAIYLLLANLYDSAGLNDFGDKTRKLMRERGLRRSPGQCWMEVRSKIHNFSAREKIDENEITQKLEFIITEFKNRGYPYQENEDKLYHSEQLAFAFGLLNVPTMAPIRINKNSLICPHCHTFVMLATQVVRRELIVRDRRRLHFFKDGQCSCRGHS* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0675 878 TIGRFAM PPR: pentatricopeptide repeat domain 587 621 IPR002885 -
Lja5g0675 878 TIGRFAM PPR: pentatricopeptide repeat domain 284 316 IPR002885 -
Lja5g0675 878 TIGRFAM PPR: pentatricopeptide repeat domain 385 419 IPR002885 -
Lja5g0675 878 TIGRFAM PPR: pentatricopeptide repeat domain 183 217 IPR002885 -
Lja5g0675 878 TIGRFAM PPR: pentatricopeptide repeat domain 82 116 IPR002885 -
Lja5g0675 878 Pfam PPR repeat family 382 429 IPR002885 -
Lja5g0675 878 Pfam PPR repeat family 181 224 IPR002885 -
Lja5g0675 878 Pfam PPR repeat family 281 326 IPR002885 -
Lja5g0675 878 Pfam PPR repeat family 584 632 IPR002885 -
Lja5g0675 878 Pfam PPR repeat family 79 126 IPR002885 -
Lja5g0675 878 Gene3D Tetratricopeptide repeat domain 141 227 IPR011990 GO:0005515
Lja5g0675 878 Gene3D Tetratricopeptide repeat domain 436 545 IPR011990 GO:0005515
Lja5g0675 878 Gene3D Tetratricopeptide repeat domain 228 330 IPR011990 GO:0005515
Lja5g0675 878 Gene3D Tetratricopeptide repeat domain 559 793 IPR011990 GO:0005515
Lja5g0675 878 Gene3D Tetratricopeptide repeat domain 331 435 IPR011990 GO:0005515
Lja5g0675 878 Gene3D Tetratricopeptide repeat domain 14 140 IPR011990 GO:0005515
Lja5g0675 878 PANTHER BNACNNG15330D PROTEIN 14 369 - -
Lja5g0675 878 PANTHER BNACNNG15330D PROTEIN 499 806 - -
Lja5g0675 878 PANTHER BNACNNG15330D PROTEIN 281 500 - -
Lja5g0675 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Lja5g0675 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Lja5g0675 878 Pfam PPR repeat 559 582 IPR002885 -
Lja5g0675 878 Pfam PPR repeat 458 481 IPR002885 -
Lja5g0675 878 Pfam PPR repeat 660 683 IPR002885 -
Lja5g0675 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 650 IPR002885 -
Lja5g0675 878 PANTHER - 14 369 - -
Lja5g0675 878 PANTHER - 499 806 - -
Lja5g0675 878 PANTHER - 281 500 - -
Lja5g0675 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Lja5g0675 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Lja5g0675 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Lja5g0675 878 Pfam E motif 702 764 IPR046848 -
Lja5g0675 878 Pfam DYW family of nucleic acid deaminases 803 876 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0675 Lja-Chr5 6077342 6079978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0675 100 877 Glycoside Hydrolase AT3G49170 32.756 9.17e-147 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0675 - - gmx:100791770 1389.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0675 5 6077342 6079978 Lja5g0675 5 6077342 6079978 ECH