Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0650 ATGTGGCCCTTCAGCAAGAAAGGACCTTCTGGGTTCTCTTCATCTTCCACAGCTGAACAAGTCACTCAAGGAATCGATGGCACTGGCCTCACTGCCGTTGTCACAGGAGCATCCAGCGGTATCGGCACTGAGACTACACGTGTTCTTGCTAAGCGTGGTGTCCATGTGATTATGGGCGTGAGAAATACAGCTGCTGGTAAAGATGTCAAAGAAACAATACTTAAGGAGAATCCCTCTGCTAAAGTTGATGCCATGGAGTTGGATCTCAGTTCAATGGAGTCTGTCAAGAAGTTTGCATCAGAGTATAAATCCTCTGGTCTTCCATTGAACATTTTGATAAACAATGCTGGAATTATGGCATGCCCTTTCATGCTATCCAAAGACAACCATGAACTGCAGTTTGCCACAAATCACTTAGGTCATTTTCTGTTGACAAACCTTTTGTTGGATACTATGAAGAAAACATCTCGTGAAAGTAAGAAAGAAGGAAGAATTGTTATTGTCTCCTCAGAAGCTCACCGATTTGCATATTCGGAAGGAATCCGTTTTGACAAAATTAATGACCAATCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCTAACATTTTACATGCCAATGAACTTACAAAACATCTCAAGGAAGACGGGGTGGATATTACTGCAAACTCTCTTCATCCAGGAACAATTACCACCAATCTTTTCCGTTATAATAGTGCAGTGAATGGTATAATTAATGTGGTTGGAAGAATGGTGATGAAAAATGTCCAGCAGGGAGCGGCTACGACATGCTATGTAGCATTGCATCCAGAGGTGAAGGGAGTTAGTGGCAAGTATTTTTCAGACAGTAATGTGTCCAAAACAACCCCACATGGGACTGACGCTGATTTAGCCAAGAAACTCTGGGATTTCAGCATGAATTTGATCAAGTAG 942 0.4236 MWPFSKKGPSGFSSSSTAEQVTQGIDGTGLTAVVTGASSGIGTETTRVLAKRGVHVIMGVRNTAAGKDVKETILKENPSAKVDAMELDLSSMESVKKFASEYKSSGLPLNILINNAGIMACPFMLSKDNHELQFATNHLGHFLLTNLLLDTMKKTSRESKKEGRIVIVSSEAHRFAYSEGIRFDKINDQSSYNNWRAYGQSKLANILHANELTKHLKEDGVDITANSLHPGTITTNLFRYNSAVNGIINVVGRMVMKNVQQGAATTCYVALHPEVKGVSGKYFSDSNVSKTTPHGTDADLAKKLWDFSMNLIK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0650 313 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 313 - -
Lja5g0650 313 Pfam short chain dehydrogenase 31 177 IPR002347 -
Lja5g0650 313 MobiDBLite consensus disorder prediction 1 20 - -
Lja5g0650 313 Gene3D - 22 313 - -
Lja5g0650 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Lja5g0650 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Lja5g0650 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Lja5g0650 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Lja5g0650 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Lja5g0650 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 290 IPR036291 -
Lja5g0650 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0650 Lja-Chr5 5831339 5836449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0650 31 286 Acyl Lipid Metabolism Gene Families AT3G55310 28.832 2.07e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0650 - - gmx:100784001 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0650 5 5831339 5836449 Lja5g0650 5 5831339 5836449 ECH