Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0634 ATGGTTTCCCAGAACGGCATCAAGCTCGCCGTGCACTTCATCACCAACCACTTCGGCACCACCGTCGCTAAAGTATGCGAAAATCTACTTCGCAAAGGACCACTCCCATTGGAACTGTTGATTCGCTACACGGAGCTTAACCACAAGGATGTCAAGAACTCGCTATTAGTCCTGATTCAACACAATTGCGTTCAACCTTTTGTTTATCTAGGTGGTGATGATGACAATGGGTCGAAAGTAGGAATACAGTACTTGGCATTGTTTGATAACATAATCCACCGGTTAAGATTTCCCAAGTTCGTCGATATTGTGTCGCGGGAGCTTGACAAGAAGTGTGTGTATCTTCTCGAAGGGTTGCTTCGTGATGGTAGGCTTACCCTTAAACAAATGATCGATAGAGCAAGTCAAGGAAAAGAAAATTCAGTGGCTACAGATGTACGAGAGAGCCTACGTAAACTTCTGAATGCTCGATATGTTGAACGCTGCCCTGCTCGTGAGGTTGGTGTTTCTACAGATTCTACAGAAGAAACTACTACTAGGAAGCGTGGTGCTAAGGCTGCCAAGGTATTTGTAGCACCAAAGACCTTAGAGCAACGTGTCATAGAAGCAGCAGTGCCTAAGGAAGTGATAAGGTTTTCGCTCACTGCAGATACAGGATGTAATGCTGACAGAGAAACAAATTCTGATGATTCCAAAATGATAAGTGTTGAAGTTGATGTTGAAGAGGAGCATACTCTTTGGCGTGCGAATTTCGAGGAGTTTATACGTTATCTTAGACATAAGGCATTGATTGAGAATGTAAGAGCACGAATGGATGATGGTGCTGCTACAGTCTTAAGTGCAATATTAGAGGCAAAAAAAACTGCAGAGGAAAAAGTGAAAATGGAATACTCAGTTCCCCTATCAATGGATATAATTTACGACGAGGTGATTAAGACTGGAAATGGTCGTACTATGACCATGGAACGTGTCAAAGATTATCTTCATCAGTTGGGTTATCCAAAAAGCATGGTGTTGGACGATCACTGTAGAATTGATTTGAAGGGAATTATCCAATGGGCTCGGAATGAGGAGGTTGAGTCAATTGTGTTAAAAAGGTATGGAATGGATGCCTACAGAATGTTCAGGCATCTGTCAAAAGAAGATATGTTTTGCCCAACAGATAAGATAGCAGAGTCTATTCTTCTTGAGAAAAAGGAAGCTCCTAGGTTACTTAACAAGTTATGGACGGATAACTACTTGTATATGGAGAGAGTAACTGTGCCAGGATCCAGGCAATCACAGATTTCAGTGTGGAAAGTTAATAAGCCTCAGATTTGGGGACTTGTACTGGACGAGATGTTCAAAGCTGCCTTAAATTTGAGCCTACGAATGGCTTATGAGCAGGAAAGGGGTGAAGGGGTTATAAATGTTCATCAAGACAAGTTTAAGGGGACACAACTGCAGAGTTACAAACGGTTAAAAAATGGCTTGTTGCTTCTGGGATCATCGTTGATGAAACTTGACGATGCTCTGATGCTTTTCCATGACTTTTGA 1536 0.4212 MVSQNGIKLAVHFITNHFGTTVAKVCENLLRKGPLPLELLIRYTELNHKDVKNSLLVLIQHNCVQPFVYLGGDDDNGSKVGIQYLALFDNIIHRLRFPKFVDIVSRELDKKCVYLLEGLLRDGRLTLKQMIDRASQGKENSVATDVRESLRKLLNARYVERCPAREVGVSTDSTEETTTRKRGAKAAKVFVAPKTLEQRVIEAAVPKEVIRFSLTADTGCNADRETNSDDSKMISVEVDVEEEHTLWRANFEEFIRYLRHKALIENVRARMDDGAATVLSAILEAKKTAEEKVKMEYSVPLSMDIIYDEVIKTGNGRTMTMERVKDYLHQLGYPKSMVLDDHCRIDLKGIIQWARNEEVESIVLKRYGMDAYRMFRHLSKEDMFCPTDKIAESILLEKKEAPRLLNKLWTDNYLYMERVTVPGSRQSQISVWKVNKPQIWGLVLDEMFKAALNLSLRMAYEQERGEGVINVHQDKFKGTQLQSYKRLKNGLLLLGSSLMKLDDALMLFHDF* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0634 511 Gene3D - 2 71 IPR036388 -
Lja5g0634 511 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 511 IPR039748 GO:0003697|GO:0005666
Lja5g0634 511 Gene3D - 250 342 IPR036388 -
Lja5g0634 511 Gene3D - 88 168 IPR036388 -
Lja5g0634 511 Gene3D - 347 435 IPR036388 -
Lja5g0634 511 Pfam RNA polymerase III subunit RPC82 149 320 IPR008806 GO:0003677|GO:0006351
Lja5g0634 511 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 8 65 IPR013197 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0634 K03023 - gmx:100784750 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0634 5 5657328 5664409 Lja5g0634 5 5657328 5664409 ECH