Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0631 ATGGTGAGCCAACGGCAGCGACTCGCTCGGAAGCGGTTCAAAGCAGAGAACCCTGAACTCTTCCCCAAACCAGAACCCACACCCCCAAAAGACCCTGACAAGAAGAAGAAGAAGAAGAGAAAAACCACCCCGTTCAAGCGCACAAAGGATGATTCAAAGGGAGTCAAAAGCAATTCCAGAAAACACCCTCTTCGTGTTCCCGGTATGAGGCCCGGCGAGACCTGTTTCATCTGCAAGGCTAGAGACCATATCGCCAAGCTCTGTCCTGAAAAAGCTGAATGGGAAAAGAACAAGATATGTTTGCGGTGTCGGCGACGTGGTCATAGAGCTCAGAACTGTCCTGAGGTGAAAGATGGCCCCAAGGATGGGAAATTCTGCTATAACTGTGGGGAAACTGGGCACCCGCTTTCGAATTGTCCGCAGCCTCTTCAAGAAGGAGGGACAAAGTTTGCTGAATGCTTTGTCTGTAAACAACGTGGACACTTGAGTAAAAACTGCCCTCAAAATGCTCATGGCATTTACCCAAAGGGTGGTTCTTGTAAAATATGTGGTGGTGTGACACATTTGGCCAAGGATTGTCCTGACAAAGGGAACAGAGGATCTGTTGCTGCTAATAGGCCTCTTCGTATATCATCGAGAACTGAAGAGAGGCCCAGTAGTCATACCAGATTTGTGAGCGGGGATGACATGGAGGACGACTTCATGGCAGATGACATAAATAGTGGTGACAAGAACACGTCCTCAAACTCAAAAGATGGCCATGTAAAACCGAAGAAGGGTCCTAAAGTTGTTAACTTTTAA 801 0.4782 MVSQRQRLARKRFKAENPELFPKPEPTPPKDPDKKKKKKRKTTPFKRTKDDSKGVKSNSRKHPLRVPGMRPGETCFICKARDHIAKLCPEKAEWEKNKICLRCRRRGHRAQNCPEVKDGPKDGKFCYNCGETGHPLSNCPQPLQEGGTKFAECFVCKQRGHLSKNCPQNAHGIYPKGGSCKICGGVTHLAKDCPDKGNRGSVAANRPLRISSRTEERPSSHTRFVSGDDMEDDFMADDINSGDKNTSSNSKDGHVKPKKGPKVVNF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0631 266 MobiDBLite consensus disorder prediction 1 67 - -
Lja5g0631 266 ProSiteProfiles Zinc finger CCHC-type profile. 126 141 IPR001878 GO:0003676|GO:0008270
Lja5g0631 266 SUPERFAMILY Retrovirus zinc finger-like domains 119 170 IPR036875 GO:0003676|GO:0008270
Lja5g0631 266 Gene3D - 150 206 - -
Lja5g0631 266 Gene3D - 94 149 - -
Lja5g0631 266 SMART c2hcfinal6 152 168 IPR001878 GO:0003676|GO:0008270
Lja5g0631 266 SMART c2hcfinal6 179 195 IPR001878 GO:0003676|GO:0008270
Lja5g0631 266 SMART c2hcfinal6 74 90 IPR001878 GO:0003676|GO:0008270
Lja5g0631 266 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Lja5g0631 266 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Lja5g0631 266 SUPERFAMILY Retrovirus zinc finger-like domains 67 116 IPR036875 GO:0003676|GO:0008270
Lja5g0631 266 MobiDBLite consensus disorder prediction 194 266 - -
Lja5g0631 266 Pfam Zinc knuckle 126 141 IPR001878 GO:0003676|GO:0008270
Lja5g0631 266 Pfam Zinc knuckle 153 168 IPR001878 GO:0003676|GO:0008270
Lja5g0631 266 MobiDBLite consensus disorder prediction 210 230 - -
Lja5g0631 266 PANTHER OS04G0555800 PROTEIN 1 266 - -
Lja5g0631 266 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Lja5g0631 266 ProSiteProfiles Zinc finger CCHC-type profile. 153 168 IPR001878 GO:0003676|GO:0008270
Lja5g0631 266 Pfam Zinc knuckle 179 194 IPR025836 -
Lja5g0631 266 Pfam Zinc knuckle 98 114 IPR025836 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0631 - - gmx:121174300 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0631 5 5631723 5635144 Lja5g0631 5 5631723 5635144 ECH