Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0629 ATGACACTTGAATGCAACGCCTCTGAATTTGAACTAGCGAACGCGGCATCTGGAATGGCTGTTGATGATGAATGTAAATTGAAGTTCGTGGAGCTAAAGGCAAAGAGGAACTACCGTTTCATTGTGTTTAAGATTGAGAGTCAGGATGTGGTGGTGGAAAAACTTGGAAGTCCAGAAGAAACCTATGATGACTTTGCTGCTTCTCTGCCTCCTGATGAGTGCCGATATGCTGTCTTTGATTTTGATTTCACCACTAATGAGAACTGCCAGAAAAGCAAGATTTTCTTCATTGCATGGGCTCCTGATATAGCAAAGGTGAGACACAAGATGGTGTATGCTAGCTCTAAGGACAGGTTCAAGAGGGAACTTGATGGCGTTCAAGTTGAGTTGCAAGCAACAGATCCTAGCGAGATGAGCCTTGATATCATAAAATCAAGAGCACTATAA 447 0.4273 MTLECNASEFELANAASGMAVDDECKLKFVELKAKRNYRFIVFKIESQDVVVEKLGSPEETYDDFAASLPPDECRYAVFDFDFTTNENCQKSKIFFIAWAPDIAKVRHKMVYASSKDRFKRELDGVQVELQATDPSEMSLDIIKSRAL* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0629 148 Pfam Cofilin/tropomyosin-type actin-binding protein 25 145 IPR002108 GO:0003779
Lja5g0629 148 CDD ADF_cofilin_like 17 147 IPR017904 GO:0015629|GO:0030042
Lja5g0629 148 SMART adf_2 23 148 IPR002108 GO:0003779
Lja5g0629 148 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 13 148 - -
Lja5g0629 148 Gene3D Severin 9 148 IPR029006 -
Lja5g0629 148 SUPERFAMILY Actin depolymerizing proteins 14 146 - -
Lja5g0629 148 ProSiteProfiles ADF-H domain profile. 18 148 IPR002108 GO:0003779
Lja5g0629 148 PANTHER COFILIN-RELATED 13 148 IPR017904 GO:0015629|GO:0030042
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0629 Lja-Chr5 5623210 5626181 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0629 K05765 - peu:105129717 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0629 5 5623210 5626181 Lja5g0629 5 5623210 5626181 ECH