Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0624 ATGAATTTGTTAGCCCGTTTAGGTCCAAAGATGGTCCATAGATTATCTCATTGTTTGATTATTTCGCGGCGATTATGCGACCGTCCGTTTGGCGGTGATGGGTTTGAATGTGTTGAGGAGCCTTTGAAAAAACTAGGTTCAGATTATGATTCCTCTGTGGATGAATGGTTCCAGTTGAATGAGGAGTCGAGCGGTAACCAAAAACCCTTTTCACTTCGAAAAGGGTTCTTAGAAAGTGTTAAGTTAGATGCTAAGAGAGTCCTTGAGATACTGAGACAAGATGGTCCTGGTCTTGATGCTAGGGTGGTTTTAGATGAGTTGCAGGTTAGGCCATCGGGGCTTCTTGTGAGGGAGGTTCTCGTTGGAATTTTGAAGAGCATTAATCATGAGAATAGGACTAGGTGTGCAAAGCTGGCCTACAAGTTTTTTGTGTGGTGTAGTCAGCAGGAGGCTTATCAGCACACTGCGAATGCGTATCACTTGATTATGAATATATATGCTGAGTGTGAGGAGTATAAGGCGTTGTGGAGGTTGGTTGGTGAGATGATTGAGAAAGGGTTTCCGGCTACTGCTCGTACTTTCAATATTTTGATTCGTACTTGTGGTGAGGCAGGCTTGGCGAAGGATTTGGTGGAGACGTTCATAAAGTCGAAGACGTTCAACTATAGGCCTTTTAAGCACTCCTACAATGCAATCCTACACAGTCTTCTAGTTTTAAACCAGTACAAGTTGATTGAGTGGGTTTATCAACAGATGCTGCTTGATGGTTTTTCCTCAGATATTTTAACTTACAATATTGTCATGTATGCCAAGTACAGACTTGGGAAGTTGGACCAGTTCCAGATACTGTTTAAAGAGATGGGCAGAAATGGATTTTCTCCAGATTTTCATACCTACAACCTCCTTCTTCACTTTCTCGGTAAAGAGGACAAACCGCTCGCAGCTGTTAATCTTTTAAAACAAATGAGAGAAACTGGTATAGAGCCAACTGTGCTTCATTACACCACGTTGATAGATGGATTGAGCAGAGCAGGAAATCTGCATGCTTGCAAACATTTTTTTGATGAAATGATAAAGAACGGGTGCATGCCAGATGTGGTGGCTTATACTGTAATGATAACAGGATATGTAGTTGCTGGTGAACTTGAGAAAGCACAGGAAATGTTTCATGAGATGATTTCTAAAGAACAAGTGCCAAATGTTTATACATACAATTCCATGATCCGGGGATTATGTATGGCAGGAAAATTTGATGAAGCATGCTCAATGCTCAAGGAAATGGAGACCAAAGGTTGTAGTCCAAACTCTGTTGTCTATGTTTCACTACTGAGTTGTTTGCAGAATGCTGGAAAGGTTGCTAATGCTCGTGAAGTGATGAGACAGATGATGGAGAAGGGGAAGTATGCCCACTTGCTTTCAAGGTTCAAGGGGTATAAAACATAG 1443 0.4165 MNLLARLGPKMVHRLSHCLIISRRLCDRPFGGDGFECVEEPLKKLGSDYDSSVDEWFQLNEESSGNQKPFSLRKGFLESVKLDAKRVLEILRQDGPGLDARVVLDELQVRPSGLLVREVLVGILKSINHENRTRCAKLAYKFFVWCSQQEAYQHTANAYHLIMNIYAECEEYKALWRLVGEMIEKGFPATARTFNILIRTCGEAGLAKDLVETFIKSKTFNYRPFKHSYNAILHSLLVLNQYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFQILFKEMGRNGFSPDFHTYNLLLHFLGKEDKPLAAVNLLKQMRETGIEPTVLHYTTLIDGLSRAGNLHACKHFFDEMIKNGCMPDVVAYTVMITGYVVAGELEKAQEMFHEMISKEQVPNVYTYNSMIRGLCMAGKFDEACSMLKEMETKGCSPNSVVYVSLLSCLQNAGKVANAREVMRQMMEKGKYAHLLSRFKGYKT* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0624 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Lja5g0624 480 Pfam PPR repeat family 297 342 IPR002885 -
Lja5g0624 480 Pfam PPR repeat family 364 412 IPR002885 -
Lja5g0624 480 SUPERFAMILY HCP-like 270 465 - -
Lja5g0624 480 Gene3D Tetratricopeptide repeat domain 252 394 IPR011990 GO:0005515
Lja5g0624 480 Pfam PPR repeat 263 292 IPR002885 -
Lja5g0624 480 Gene3D Tetratricopeptide repeat domain 83 251 IPR011990 GO:0005515
Lja5g0624 480 Gene3D Tetratricopeptide repeat domain 395 467 IPR011990 GO:0005515
Lja5g0624 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Lja5g0624 480 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 479 - -
Lja5g0624 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Lja5g0624 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Lja5g0624 480 TIGRFAM PPR: pentatricopeptide repeat domain 367 401 IPR002885 -
Lja5g0624 480 TIGRFAM PPR: pentatricopeptide repeat domain 437 466 IPR002885 -
Lja5g0624 480 TIGRFAM PPR: pentatricopeptide repeat domain 402 436 IPR002885 -
Lja5g0624 480 TIGRFAM PPR: pentatricopeptide repeat domain 334 366 IPR002885 -
Lja5g0624 480 TIGRFAM PPR: pentatricopeptide repeat domain 297 331 IPR002885 -
Lja5g0624 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Lja5g0624 480 Pfam Pentatricopeptide repeat domain 423 466 IPR002885 -
Lja5g0624 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Lja5g0624 480 PANTHER OS10G0506000 PROTEIN 1 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0624 Lja-Chr5 5587389 5589429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0624 228 466 Glycosyltransferase AT1G05670 33.054 1.54e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0624 - - ccaj:109794849 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0624 5 5587389 5589429 Lja5g0624 5 5587389 5589429 ECH