Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0617 ATGGTGTCATCTCAGGTGGTAAACACATACCCTCTTTCCAGCTACACCTTCGGTACCAAGGAGCCCAAGATGGAGAAAGACACCTCCGTCGCCGATCGTCTCGCTCGCATGAAAGTCAACTATATGAAGGAAGGAATGAGGACCAGCGTTGAAGGAATTTTACTGGTCCAAGAACATAATCATCCTCATATACTTCTCCTGCAAATTGGAAACACATTTTGCAAACTCCCTGGTGGTCGTCTCAAGCCAGGAGAGAATGAAATTGAGGGCTTGAAGAGAAAGTTGACCAGCAAGCTTGGTGCTAATTCACCGGCTCTTGTGCCTGACTGGCAGATTGGTGAATGTGTTGCAATCTGGTGGAGGCCAAATTTTGAAACCATAATGTACCCATACTGCCCTCCTCATATAACAAAACCCAAGGAGTGCAAGAAGCTCTTCCTTGTTCACTTGTCTGAGAGGGAATACTTTGCCGTGCCCAAAAACTTGAAACTGCTTGCTGTTCCATTGTTTGAACTCTATGACAATGTTCAGAGATACGGGCCAGTTATATCCACCATTCCTCAGCAGCTTTCCAGATTCCAGTTTAAAATGATCACTAATTGA 603 0.4511 MVSSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFKMITN* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0617 200 ProSiteProfiles Nudix hydrolase domain profile. 46 171 IPR000086 -
Lja5g0617 200 Pfam Nucleotide hydrolase 6 193 IPR016706 GO:0003729|GO:0005849|GO:0006378
Lja5g0617 200 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 1 182 IPR016706 GO:0003729|GO:0005849|GO:0006378
Lja5g0617 200 PIRSF CPSF-25 1 200 IPR016706 GO:0003729|GO:0005849|GO:0006378
Lja5g0617 200 PANTHER PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 2-LIKE 1 182 - -
Lja5g0617 200 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 197 - -
Lja5g0617 200 SUPERFAMILY Nudix 53 152 IPR015797 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0617 Lja-Chr5 5537418 5541547 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0617 K14397 - gmx:100790200 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0617 5 5537418 5541547 Lja5g0617 5 5537418 5541547 ECH