Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0616 ATGGGAAAGCAAAAGCAGCAAGTCATCTCTCGCTTCTTCGCCCCCAAACCCAAACCTCCTTCATCCACCACCGATTCCCCTTCTCCTCCTCCGTCCTCTCCTCGTCCAAACCCTCCCACTCCAAAAATCTCAGCCACCGTCACTTTCTCTCCGGCGAAACGCCGCCTTACCTCTCAGCTAACATCCCCCCACAAGTCCCCCAAACTCCCCAAACTCTCCCCTCACACCCACAACCACAGCCCCTCACTCCACCAACGCTTCCTCCAGAAGCTTCTGGAACCTTCCTCACACCCTTCTACTTCTGACCCACAACCCCATTCGTCTTTCAAATCAGTGAAGTACACTCCGTTGGAGCAACAGGTGGTGGAGCTCAAAGCCAAACACCCTGATGTTCTTTTGATGGTTGAAGTTGGTTATAAGTACCGGTTCTTCGGCGAAGATGCTGAGAATGCTGCTAGAGTTTTGGGTATATATGCTCACATGGATCATAATTTCTTGACTGCGAGCATACCAACTTTTCGATTGAATGTCCATGTGAGGAGGCTTGTGAGTGCAGGGTACAAGGTTGGTGTGGTTAAGCAGACTGAGACTGCAGCTATTAAGGCTCATGGGTTGAACAAGTCCGGCCCGTTTTGTCGAGGCTTGTCGGCATTGTACACCAAGGCCACGCTGGAGGCGGCAAAGGATTTGGGGGGTGATGAAGAGGGGTGTGGGGCAGTGAGTAACTACTTGCTGTGTGTTGTGGAGAAGAGCATTTTAGGAGAGAGGTCTAATTGTGGGGTGGAGGGTGGTTTTGATGTTAGGGTTGGAATTGTTGCTGTGGAGATATCAACTGGGGATGTTGTTTATGGAGAGTTTAATGACAATTTTATGAGGAGTGAGCTTGAGGCTGTGCTTGTGAGCTTGTCTCCGGCTGAGTTGCTTCTTGGTGACCCTCTTTCCAGACAAACTGAGAAGTTATTACTGGATTTTGCTGGACCTGCCTCAAATGTTCGTGTGGAACGTGCCTCACGAGATTGCTTCACTGGTGGAGGTGCTCTTGCTGAAGTTCTGACCTTGTATGAGAACATGTGTGTCGACAGCCCATCGCATTCAATGCAAAGCAATGATTTGAATGAGCAAAGCAATCAGCAGTTGGTAGTCAAGGAGGTAATGAACATGCCAGATTTGGCTGTCCAAGCATTGGCTTTAACTGCTCACCATTTGAAGGGATTCAGTTTTGAAAGAATTCTATGTTCAGGCGCTTCTTTAAGGCCCTTCGTAACCAAAACGGAAATGATCCTCTCGGCCAATGCACTACAACAACTAGAGGTTTTACAAAATAAAATTGATGGATCTGAGAGTGGTTCCTTGCTGCAAATTATGAATCATACTCTTACTATATTTGGTTCCAGGCTTCTTAGGCATTGGGTATCTCACCCATTATGTGATCAAACCTTGATATCTGCTCGTCTTGATGCTGTATGTGAAATAGCAGAGTCCATGGGATCTTTTAAGGGCAAGAAGCTTGGATGTTTTGAGGAAGAGCCTGATGTATCAATTGTGCAGCCTGAGTTGGCATATGTACTTTCACTGGTTTTGACAGCTCTGAGCCGAGCACCTGATATACAGCGTGGGATTACAAGAATTTTTCACTGCACTGCTACTCCATCTGAGTTCATTGCCGTTGTTCAAGCTATTTTGTCTGCTGGGAAGCGGCTTCAGCAACTTAAAATAGGGGAGGAGGATAATAATAAATTATGCTCTCATCTGTTAAAGAAGTTAATTTTAACTGCTTCATCTGCCAGTGTCATTGGTAATGCTGCAAAATTGTTGTCATCCTTAGACAAAGACTCTGCCGATCAAGGAGATATACCAAATCTGATCATTGCATCTGAAGGACGATTTCCCGAGGTCATTAGAGCTAGGAAGGATTTTCAAATGGCAGTGGAACAATTAGATTCATTGATTAGCTTGTACCGTAAACGGCTTGGAATACGAAATTTGGAATTCTTGAGTGTTTCTGGAGCAACACATTTGATAGAGTTATCAACAGATGTAAGAGTGCCTTCAAACTGGGTTAAGGTGAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTAGATGGCTTATCATTAGCGAAAGAGGAGCTTACTATTGCCTGCCGAGCTGCATGGGATAGCTTTCTGAGGGACTTCAGTAAACACTATGCTGAGTTTCAAGCTGCTGTTCAAGCACTTGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAGAAATAAGAGTTATGCTCGCCCAGTGTTTGTAGATGATTATGAACCTGTTCAGATACAAATTTGTTCTGGCAGACATCCGGTTTTGGAGACTACCTTACAAGACAATTTTGTCCCAAATGATACAAACATGCACGCAGACAGAGAGTACTGTCAGATTGTCACTGGACCCAATATGGGAGGAAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGCTGTAATGGCTCAGCATCATCAGCAAAACTGCATGTCCTGGATGGGATCTACACCCGGATGGGTGCTTCTGACAGTATTCAGCAAGGTAGAAGCACTTTCCTAG 2598 0.4546 MGKQKQQVISRFFAPKPKPPSSTTDSPSPPPSSPRPNPPTPKISATVTFSPAKRRLTSQLTSPHKSPKLPKLSPHTHNHSPSLHQRFLQKLLEPSSHPSTSDPQPHSSFKSVKYTPLEQQVVELKAKHPDVLLMVEVGYKYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGLNKSGPFCRGLSALYTKATLEAAKDLGGDEEGCGAVSNYLLCVVEKSILGERSNCGVEGGFDVRVGIVAVEISTGDVVYGEFNDNFMRSELEAVLVSLSPAELLLGDPLSRQTEKLLLDFAGPASNVRVERASRDCFTGGGALAEVLTLYENMCVDSPSHSMQSNDLNEQSNQQLVVKEVMNMPDLAVQALALTAHHLKGFSFERILCSGASLRPFVTKTEMILSANALQQLEVLQNKIDGSESGSLLQIMNHTLTIFGSRLLRHWVSHPLCDQTLISARLDAVCEIAESMGSFKGKKLGCFEEEPDVSIVQPELAYVLSLVLTALSRAPDIQRGITRIFHCTATPSEFIAVVQAILSAGKRLQQLKIGEEDNNKLCSHLLKKLILTASSASVIGNAAKLLSSLDKDSADQGDIPNLIIASEGRFPEVIRARKDFQMAVEQLDSLISLYRKRLGIRNLEFLSVSGATHLIELSTDVRVPSNWVKVNSTKKTIRYHPPEVVTALDGLSLAKEELTIACRAAWDSFLRDFSKHYAEFQAAVQALAALDCLHSLAILSRNKSYARPVFVDDYEPVQIQICSGRHPVLETTLQDNFVPNDTNMHADREYCQIVTGPNMGGKSCYVRQVALIAVMAQHHQQNCMSWMGSTPGWVLLTVFSKVEALS* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0616 865 SUPERFAMILY DNA repair protein MutS, domain II 242 317 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lja5g0616 865 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 94 836 - -
Lja5g0616 865 MobiDBLite consensus disorder prediction 20 41 - -
Lja5g0616 865 Gene3D MutS, connector domain 238 425 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lja5g0616 865 Pfam MutS domain III 431 756 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lja5g0616 865 SUPERFAMILY DNA repair protein MutS, domain III 430 761 IPR036187 -
Lja5g0616 865 SUPERFAMILY DNA repair protein MutS, domain I 107 223 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lja5g0616 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 764 837 IPR027417 -
Lja5g0616 865 MobiDBLite consensus disorder prediction 1 83 - -
Lja5g0616 865 Gene3D - 764 839 IPR027417 -
Lja5g0616 865 Gene3D - 428 756 - -
Lja5g0616 865 MobiDBLite consensus disorder prediction 42 66 - -
Lja5g0616 865 Pfam MutS domain I 115 225 IPR007695 GO:0005524|GO:0006298|GO:0030983
Lja5g0616 865 Pfam MutS domain V 811 836 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lja5g0616 865 Gene3D DNA repair protein MutS, domain I 105 233 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lja5g0616 865 Pfam MutS domain II 242 335 IPR007860 GO:0005524|GO:0006298|GO:0030983
Lja5g0616 865 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 94 836 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lja5g0616 865 PIRSF Msh6 3 112 IPR017261 GO:0006298|GO:0030983
Lja5g0616 865 PIRSF Msh6 98 837 IPR017261 GO:0006298|GO:0030983
Lja5g0616 865 Gene3D - 606 732 - -
Lja5g0616 865 SMART DNAend 446 791 IPR007696 GO:0005524|GO:0006298|GO:0030983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0616 K08736 - gmx:100789883 1244.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0616 5 5525387 5533961 Lja5g0616 5 5525387 5533961 ECH