Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0594 ATGGCTTTCTCTTCTTCCTCTAGGCTTGACCACTTCAACATCATCTCTGCATTCAAACCTCAAAATTCCATTCTCCCACCATCACTCAAACCTTCCTCGTACCTCCCCTCTTCTTCCTTCAAATTTCGAAACCTGCTTCCATTCAGAATCCGCTATGCTTCAACCATCAGAGCCACTTCTTCATCGTCATCACCCTCTTCTCCTTCCACCACCATTGACCAATCTGATGATGGCATTAAGATTAATTCGATTCCAACCAAACCCATCGAAGGACAAAAAACTGGTACCAGTGGGCTGAGAAAGAAGGTGAAAGTGTTTATGGAAGAAAATTACCTTGCGAATTGGATCCAGGCACTGTTCAATTCATTGCCTCCAGAAGATTACAAGAATGGTGTGTTGGTGTTGGGAGGTGATGGTCGATACTTTAATAAGGAAGCTGCGCAGATAATAATCAAAATCGCTGCTGGAAATGGTGTTGGAAAAATTCTGGTTGGAAAGGAAGGTGTATTGTCAACACCAGCCGTCTCTGCTGTTATAAGGAAGAGGAAGGCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGTGGGCCTGAATATGATTGGGGTATTAAGTTTAATTACAGTAGTGGGCAACCTGCACCAGAATCCATCACTGACAAGATCTATGGAAACACCCTATCTATATCTGAGATAAAGATTGCTGACATTCCTGATGTTTACTTATCAAATGTTGGGGTCACCGAGTTTGGAAGCTTCAGTGTGGAAGTAATAGACCCAGTTTCTGATTATCTGGAGCTATTGGAGACAGTATTTGATTTTCAGCTAATCAAAGGCCTTCTTTCACGGCCAGATTTTAGGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCAAAACCCATCTTTGTTGATAAACTGGGTGCTAGTCCGGATTCAATTTTAAATGGAATCCCTTTGGAGGATTTTGGACATGGTCACCCTGATCCTAATCTAACATATGCAAAGGATCTTGTCAACATTTTGTATGCTGAAAATGGACCTGATTTTGGAGCTGCCAGTGATGGTGATGGTGACAGAAATATGATTTTAGGAAGAAGTTTCTTTGTAACTCCTTCAGACTCTGTAGCAGTTATTGCAGCCAATGCAAAAGAAGCTATTCCGTACTTCAAGAACGGTGTTAATGGTCTTGCTCGATCAATGCCCACAAGTGGTGCTCTGGATCGTGTTGCTGAAAAATTGAACCTCCCCTTCTTTGAGGTCCCTACTGGTTGGAAATTTTTCGGCAATCTTATGGATGCTGGGAAATTGTCAATTTGCGGTGAAGAGAGTTTTGGAACCGGCTCTGACCACATTCGTGAGAAAGATGGCATCTGGGCTGTATTAGCTTGGCTTTCTATTATTGCACACCGCAACAAAGACAAGAAACCAGAAGAGAAATTGATCTCTGTATCTGATGTCATGATGGAGTACTGGGCAACTTATGGAAGAAATTTCTTTTCTCGATATGACTATGAGGAATGTGAATCTGAAGGGGCCAATAAGATGATAGCTTACTTACGAGAAACTGTGTCTAATAGCAAGCCTGGTGATAAGTATGGAAGTTATGTCCTCCAGTTTGCAGATGATTATACATACACTGATCCTGTTGATGGAAGTGTGGTATCGAAACAAGGGGTTCGGTTTGTTTTCACAGATGGCTCGAGGATTATTTATCGTTTATCAGGAACAGGTTCTGCTGGTGCAACTGTTAGAGTGTACATTGAGCAGTTTGAAGCAGATGTCTCTAAGCATGACGTTGATGCTCAAATTGCCTTAAAACCTTTAATAGATTTAGCATTATCCGTGTCAAAGCTCAAAGATTTTACAGGGAGGGAGAAGCCTACAGTCATCACATAA 1908 0.4167 MAFSSSSRLDHFNIISAFKPQNSILPPSLKPSSYLPSSSFKFRNLLPFRIRYASTIRATSSSSSPSSPSTTIDQSDDGIKINSIPTKPIEGQKTGTSGLRKKVKVFMEENYLANWIQALFNSLPPEDYKNGVLVLGGDGRYFNKEAAQIIIKIAAGNGVGKILVGKEGVLSTPAVSAVIRKRKANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKIADIPDVYLSNVGVTEFGSFSVEVIDPVSDYLELLETVFDFQLIKGLLSRPDFRFIFDAMHAVTGAYAKPIFVDKLGASPDSILNGIPLEDFGHGHPDPNLTYAKDLVNILYAENGPDFGAASDGDGDRNMILGRSFFVTPSDSVAVIAANAKEAIPYFKNGVNGLARSMPTSGALDRVAEKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKKPEEKLISVSDVMMEYWATYGRNFFSRYDYEECESEGANKMIAYLRETVSNSKPGDKYGSYVLQFADDYTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEADVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0594 635 CDD PGM1 84 635 - -
Lja5g0594 635 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 57 635 IPR045244 GO:0004614|GO:0005975
Lja5g0594 635 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 264 367 IPR005845 GO:0005975
Lja5g0594 635 SUPERFAMILY Phosphoglucomutase, first 3 domains 82 293 IPR016055 GO:0005975|GO:0016868
Lja5g0594 635 PANTHER PHOSPHOGLUCOMUTASE, CHLOROPLASTIC 57 635 - -
Lja5g0594 635 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 375 492 IPR005846 GO:0005975|GO:0016868
Lja5g0594 635 SUPERFAMILY Phosphoglucomutase, C-terminal domain 500 635 IPR036900 GO:0016868|GO:0071704
Lja5g0594 635 Gene3D - 501 635 - -
Lja5g0594 635 MobiDBLite consensus disorder prediction 59 93 - -
Lja5g0594 635 PRINTS Phosphoglucomutase/phosphomannomutase family signature 286 305 IPR005841 GO:0005975|GO:0016868
Lja5g0594 635 PRINTS Phosphoglucomutase/phosphomannomutase family signature 186 200 IPR005841 GO:0005975|GO:0016868
Lja5g0594 635 PRINTS Phosphoglucomutase/phosphomannomutase family signature 351 366 IPR005841 GO:0005975|GO:0016868
Lja5g0594 635 PRINTS Phosphoglucomutase/phosphomannomutase family signature 322 335 IPR005841 GO:0005975|GO:0016868
Lja5g0594 635 MobiDBLite consensus disorder prediction 59 95 - -
Lja5g0594 635 SUPERFAMILY Phosphoglucomutase, first 3 domains 359 504 IPR016055 GO:0005975|GO:0016868
Lja5g0594 635 Gene3D - 80 268 - -
Lja5g0594 635 Gene3D - 372 500 - -
Lja5g0594 635 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 92 231 IPR005844 GO:0005975|GO:0016868
Lja5g0594 635 SUPERFAMILY Phosphoglucomutase, first 3 domains 263 372 IPR016055 GO:0005975|GO:0016868
Lja5g0594 635 Gene3D - 269 371 - -
Lja5g0594 635 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 558 610 IPR005843 GO:0016868|GO:0071704
Lja5g0594 635 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 187 196 IPR016066 GO:0000287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0594 Lja-Chr5 5326269 5334635 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0594 K01835 - gmx:100802730 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0594 5 5326269 5334635 Lja5g0594 5 5326269 5334635 ECH