Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0584 ATGGAAGCCATTTCCAAGCAAAACCATGATGTCCCTCCCTTCCATGCAACCACTCCTCACCAGTCCACCACTCTCTTATCAACCCATCTCATTTCAAAACTCTTGGGATTTTTAAGGGCTTGTGCCTTCTTGCTTGTAGCATCTGCTGAAGTGTTTTTACTTCTGCAAAAATGGGAACTAATGTTCCATTTTCTGCTACTCTGTTTTCCCCTCCTCTGTTACCTTCTAAAGCACTTCCTCTCAAAGGCCTCTCCTATTTACCTTATTTTTGACACTGAAAGCTTAGCTTTCATGTCCAAAGTGCTCCACTCTTCAGGGCAGAGTGAAGAGACATGTCTCCCCCCTGCCTTACACCACATCCCTCCAAAAACCCACCAAGCTGAATCCATCAAAGAGGTTCACATGGTTCTGTTTCCCATCATGGATGATCTCCTAGCAAAAACCAAAACCTCACCACATGAAATTGACATTCTCATCATAAATTGCAGTGGCTTTTGTCCTTCCCCTTCTCTAACCTCCATTGTCATCAACAAATACTCCATGAGAAGTGACACCAAGAGCTACAACATCTCTGGCATGGGGTGCAGTGCAAGTGCACTCTGCATTGATCTAGCACAGAATCTTCTCAGAGTTCACAAAAACTCCAATGTTGTCATTCTCAGCACAGAGATTCTATCAACAGGTTGGTATTCAGGTAAAGAACCCTCCAAGTTACTGATCAATTGCCTTTTCAGGATGGGAAGTGCAGCACTTCTTCTCTCAAACAAAAAACAAGCAAGAAACTCTGCAAAATACAGAGTCCTCAGGACACTGAGAACACAGAGAGCCTTTGATGAAAAGGCCTATTTTTCTGCCATGAGGGAGGAAGATTCAGAAGGGAAACTGGGGGTTACTCTCAAGCGTGACCTGCTTCAGGTAGCAGGTGAAACTCTCCGTTCAAACATCTCCATTCTGGGTTCTGAAATCTTGCCTCTTTCTGAGAAATTCTGGTATGGAGTTTCTGTGATCAAGAAGAAGTTCATAAAGTCTGAGGGGATTTACGTGCCGAATTTCAAGACTGTGATTCAGCATTTTTGCTTGCCATGTTCTGGAAGAGCAGTGATAAGAGAAGTGGGAAAAGGGTTGAAGCTTGCAGAGAGAGATATTGAACCTGCTATGATGACACTGTACAGGTTTGGGAATCAATCATCTTCTTCACTGTGGTACGAACTGGCTTACTTGGAAGCCAAGGAAAGAGTTCAGAAAGGTGATAAGGTCTGGCAGCTTGGAATGGGAAGCGGGCCAAAGTGTATCAGTGTGGTTCTGAAATGTGTTAGGCCTCTAGTTGGTGAGTCCAAGAAGGGACCATGGGCTGATTGCATCCATCAATACCCAATAGTAGCTTTGGATTAA 1392 0.4411 MEAISKQNHDVPPFHATTPHQSTTLLSTHLISKLLGFLRACAFLLVASAEVFLLLQKWELMFHFLLLCFPLLCYLLKHFLSKASPIYLIFDTESLAFMSKVLHSSGQSEETCLPPALHHIPPKTHQAESIKEVHMVLFPIMDDLLAKTKTSPHEIDILIINCSGFCPSPSLTSIVINKYSMRSDTKSYNISGMGCSASALCIDLAQNLLRVHKNSNVVILSTEILSTGWYSGKEPSKLLINCLFRMGSAALLLSNKKQARNSAKYRVLRTLRTQRAFDEKAYFSAMREEDSEGKLGVTLKRDLLQVAGETLRSNISILGSEILPLSEKFWYGVSVIKKKFIKSEGIYVPNFKTVIQHFCLPCSGRAVIREVGKGLKLAERDIEPAMMTLYRFGNQSSSSLWYELAYLEAKERVQKGDKVWQLGMGSGPKCISVVLKCVRPLVGESKKGPWADCIHQYPIVALD* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0584 463 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 355 436 IPR013747 -
Lja5g0584 463 Pfam FAE1/Type III polyketide synthase-like protein 89 339 IPR013601 GO:0006633|GO:0016020|GO:0016747
Lja5g0584 463 PANTHER 3-KETOACYL-COA SYNTHASE 77 461 - -
Lja5g0584 463 SUPERFAMILY Thiolase-like 244 438 IPR016039 GO:0016746
Lja5g0584 463 PANTHER 3-KETOACYL-COA SYNTHASE 77 461 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lja5g0584 463 Gene3D - 89 437 IPR016039 GO:0016746
Lja5g0584 463 PIRSF Very_long_ch_3-ktacl-CoA_syn 72 462 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lja5g0584 463 SUPERFAMILY Thiolase-like 88 259 IPR016039 GO:0016746
Lja5g0584 463 CDD CHS_like 93 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0584 Lja-Chr5 5211553 5213025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0584 41 459 Miscellaneous Gene Families AT1G25450 44.313 8.02e-133 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0584 K15397 - gmx:100813265 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0584 5 5211553 5213025 Lja5g0584 5 5211553 5213025 ECH