Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0583 ATGGCTAGGCTATGTCACTCTTCTTTCTTAATCACAACACTATTACTCCAGTTTTTCAGCTTCTGCATTTCTTGGCATGAGCAAGTAGTACCAACACCCCCATTACCAATTCTCCCACTACCAACATTTTCCCAGTTGAAATGGCAACAAAGGGAGATCATAATGTTCCTTCATTTTGGTGTCAACACATTCTCAGACAGAGAATGGGGCACAGGCCATGAAAGCCCAGCAATTTTCAACCCAACGGGCCTCAGCACAGCCCAGTGGGCCAATGTGGCAGCAGAGGCAGGAATTTCACTAATGATATTAACTGCAAAACACCATGATGGGTTCTGCCTCTGGCCTTCTAAGTACACCAAACATTCAGTCATTAGCAGCCCTTGGCAAGGTGGTAAAGGCGATGTTGTTGGAGAGTTTGTGAATGCAGCTTCTGCACAAGGAATAGATGTAGGGATCTATCTTTCACCATGGGATAGGCATGATTCTAGATATGGGCATGATTTGCTTTACAATGAATACTACATGGCTCAATTGCAAGAGCTTCTCAACAAATATCAAAATGTAAGGGAGATTTGGTTTGATGGTGCAAAGGATCCCAAGGCACAAAATGTATCATATTATTTTTCAGATTGGTTCTCTATGGTAAAGGAGTTGCAGAGTTCCATCAATATCTTCTCCGATGCTGGTCCTGATGTTAGGTGGGTGGGAGATGAAACAGGGTCTGCAGGGTACACGTGTTGGTCTACCATTAATCGAACCTCACTAGCAATTGGAAGTCCAAACATTTCAAAGTATCTAAGTACTGGTGATCCAAGAGGGACAGATTGGCTACCAGCAGAATGTGATGTTTCAATAAGAAAAGGATGGTTTTGGCACAAGTCAGAATCACCAAGAAAGCTAAGTGAGCTACTTGATATTTATTACAATTCAGTTGGGAGGAATTGTGTGTTACTTCTCAACGTACCTCCCAATACAACTGGTCTTATATCTGACACTGATGCTCATAGATTGAAAGAATTAAGAAGTGCAATTAACACAATATTTCACAAGAATCTAGCTGAAGATTGTTATGTTAAAGTTAGTAGCCAGAGAGGAGGAAATGAGGGAGGGTTTGGACCAGAAAACATGCTAGACAGTGATCACTTGTGGTCCTACTGGGCCCCAAGGGAAGAAGAAGAAGGTGAAAATAATGACCATTGGATTGAAATTTGGGGCAAGGATGGGAGTTTGAGATTCAATGTGATTAGAATACAAGAAGCAATTGGACTTGGTCAAAGGATCAAGCGGCATGAAATTTATGTGGATGGTAAGCTGATCATCAAAGGGACAACAGTGGGTTATAAGAGGCTTCACAGGCTTGATGGAGATGTGAATGCTCAGGTTGTGAGGATCAGAATTAAAAAGGCAAGAGCAGTGCCTCTTATTTCTTCTATTGGTCTGCATTTTGATCCTTACTGGCACTCAAGTTTTACTGTGACATGA 1482 0.419 MARLCHSSFLITTLLLQFFSFCISWHEQVVPTPPLPILPLPTFSQLKWQQREIIMFLHFGVNTFSDREWGTGHESPAIFNPTGLSTAQWANVAAEAGISLMILTAKHHDGFCLWPSKYTKHSVISSPWQGGKGDVVGEFVNAASAQGIDVGIYLSPWDRHDSRYGHDLLYNEYYMAQLQELLNKYQNVREIWFDGAKDPKAQNVSYYFSDWFSMVKELQSSINIFSDAGPDVRWVGDETGSAGYTCWSTINRTSLAIGSPNISKYLSTGDPRGTDWLPAECDVSIRKGWFWHKSESPRKLSELLDIYYNSVGRNCVLLLNVPPNTTGLISDTDAHRLKELRSAINTIFHKNLAEDCYVKVSSQRGGNEGGFGPENMLDSDHLWSYWAPREEEEGENNDHWIEIWGKDGSLRFNVIRIQEAIGLGQRIKRHEIYVDGKLIIKGTTVGYKRLHRLDGDVNAQVVRIRIKKARAVPLISSIGLHFDPYWHSSFTVT* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0583 493 SUPERFAMILY (Trans)glycosidases 35 345 IPR017853 -
Lja5g0583 493 Gene3D Glycosidases 36 354 - -
Lja5g0583 493 SMART alpha_l_fucos 38 352 IPR000933 GO:0004560|GO:0005975
Lja5g0583 493 Pfam Alpha-L-fucosidase 76 340 IPR000933 GO:0004560|GO:0005975
Lja5g0583 493 Gene3D - 361 481 - -
Lja5g0583 493 PANTHER ALPHA-L-FUCOSIDASE 18 489 IPR000933 GO:0004560|GO:0005975
Lja5g0583 493 PANTHER OS09G0520800 PROTEIN 18 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0583 Lja-Chr5 5200935 5205938 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0583 K01206 - gmx:100805382 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0583 5 5200935 5205938 Lja5g0583 5 5200935 5205938 ECH