LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g0486	ATGGATGCAAGAAGAGTTTCTTCTTGTTCTTCAGCTTCCATGATTCTTCTTTTTCTTGTAGCTACCCTTGCTGCTTATAGTCATTCATCAGAAGCAGCAGTGACCAAGGGATCTTTTGAGGATAATTTCAGCATAATGTGGTCTGAGAATCACTTTACAACTTCTACAGATGGACAGATCTGGAATCTCGCCCTAGACAATGACACAGGATGTGGATTTCAAACAAAACAAAGGTACAGATTTGGGTGGTTCAGTATGAAGCTGAAGTTGGTTGCAGGTGACTCTGCTGGTGTTGTCACAGCTTATTATATGTGCTCGGAAAATGGAGCAGGGCCAGAGAGAGATGAGCTTGATTTTGAGTTTTTGGGAAACAGAACAGGGGAACCTTATTTGATTCAGACAAATGTGTACAAGAATGGGAATGGTTCGCGTGAGATGAGGCATGTGCTGTGGTTTGATCCCACTGAGGACTATCACACCTATTCTGTTCTCTGGAACAACCACCAGATAGTGTTTTTTGTGGATAAAGTTCCCATCAGGGTGTTCAAGAACAATGGGAAACCAAACAATTTCTTCCCCAATGAGAAACCTATGTTCCTGTTTTCCAGCATATGGAATGCAGATGACTGGGCCACAAGAGGTGGACTTGAGAAGACAAACTGGAAACTAGCACCATTTGTGTCATCCTACAAGGACTTCAGTGTGGATGCTTGTCAATGGGAAGATCCATTCCCTGCATGTGTCTCAACCACAACCAAATATTGGTGGGATCAATATAATGCTTGGCACCTCTCAGATGATCAGAAAACTGATTATGCTTGGGTTCAGAGGAACCTTGTCATCTATGACTATTGCAAGGATACTGAACGTTTTACAACCATGCCTGAGGAGTGTTCATTGAGTCCATGGGCATAA	915	0.4284	MDARRVSSCSSASMILLFLVATLAAYSHSSEAAVTKGSFEDNFSIMWSENHFTTSTDGQIWNLALDNDTGCGFQTKQRYRFGWFSMKLKLVAGDSAGVVTAYYMCSENGAGPERDELDFEFLGNRTGEPYLIQTNVYKNGNGSREMRHVLWFDPTEDYHTYSVLWNNHQIVFFVDKVPIRVFKNNGKPNNFFPNEKPMFLFSSIWNADDWATRGGLEKTNWKLAPFVSSYKDFSVDACQWEDPFPACVSTTTKYWWDQYNAWHLSDDQKTDYAWVQRNLVIYDYCKDTERFTTMPEECSLSPWA*	305

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g0486	304	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	24	230	IPR000757	GO:0004553\|GO:0005975
	Lja5g0486	304	PRINTS	Glycosyl hydrolase family 16 signature	71	89	IPR008264	GO:0004553\|GO:0005975
	Lja5g0486	304	PRINTS	Glycosyl hydrolase family 16 signature	132	145	IPR008264	GO:0004553\|GO:0005975
	Lja5g0486	304	PRINTS	Glycosyl hydrolase family 16 signature	150	167	IPR008264	GO:0004553\|GO:0005975
	Lja5g0486	304	Gene3D	-	25	301	-	-
	Lja5g0486	304	SUPERFAMILY	Concanavalin A-like lectins/glucanases	38	302	IPR013320	-
	Lja5g0486	304	PIRSF	EndGlu_transf	2	303	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Lja5g0486	304	Pfam	Glycosyl hydrolases family 16	40	222	IPR000757	GO:0004553\|GO:0005975
	Lja5g0486	304	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	14	303	IPR044791	GO:0004553
	Lja5g0486	304	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	14	303	-	-
	Lja5g0486	304	CDD	GH16_XET	35	298	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Lja5g0486	304	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	251	298	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Lja5g0486	304	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	116	126	IPR008263	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g0486	Lja-Chr5	4247502	4249742	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g0486	11	298	Glycoside Hydrolase	AT5G13870	50.694	5.55e-98	288

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g0486	K08235		-	gmx:100793766	570.081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja5g0486	5	4247502	4249742	Lja5g0486	5	4247502	4249742	ECH