LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g0466	ATGGCCATGGTTTTCAAGTCAATGGCTGCTTCAGCAAGCGATCTAAGTCTCGTAAGACTATCTAATGGTGCTGGAAAGCCCCCAGTTGATTTGAAGAGTCGAGTTTTTGGTGGCAGAGTTTTCAGTCTTGGATTCTGTTGCAGGGGAGAGAAATGGAAGGGGAATCATGGTGTTAAGGTTCGTGCAGCTTTGCAATTGGATGTGGAGGAACCAAAGAGTAAGAGTGCATTGGAGGGAACCCTTGGTTTGGATGTGGTTTCTGAGGGAGAGTTAATGGTGAAGGGGTTTAAGGGGTTGAGGAAGACAAAGCTGGTTTGTACTGTTGGTCCTGCTTGCAGCTCATTGGAGGATTTAGAGAAGTTGGCATTGGGAGGAATGAATGTTGCCAGGTTTAATATGTGCCATGGTACTAGGGAATGGCACCGTGACGTGATTAGGAAGATTAAGAAGTTGAATGAGGAAAAAGGTTTCTCTGTTTCTGTGATGATTGACACTGAGGGTAGTCAGATTCATGTTGTTGATCACGGGGCTTCGTCCTCGGTTAAAGTAGAGGAAGGTTCGATTTGGCGGTTTACTGCTGAACATTTTGAGGGTTCTCGTCCATTCACCGTTCAAGCAAACTATAAAGGCTTTTCTGAAGGTATTGAAGTGGGTGATGAACTTGTTATTGATGGTGGAATGGCATGCTTTGAAGTCATTGAGAAGACTGGAAATGATTTGCATTGTAAGTGCATAGATGCTGGTCTTTTCTTGCCTGGGGCCAAATTAAGTTTCTGGAGAGATGGAAAGCTTGTGAGGAGGAATTACAACCTGTCCGCTATATCAAAGAAGGATTGGGCTGACATTGACTTTGGTATAGCAGAAGGTGTTGATATTTTTGCCTTATCCTTTGTCAGTCATGCTGATTCTGTTAAGGACCTAAAGAACTATCTCTCTACCAAATCAACCAAATCCATAAAAGTACTGGCAAAGATAGAAAGCTTAGAATCCCTTTATAATCTGGAGGCAATAGTGCAAGCTTCTGACGGGATCATGGTGGCTCGGGGTGACCTGGGAGTTGAAATACCACTTGAACAGATTCCTACAGTCCAAGAGGATATAATTTACATTTGCAGACAACTAAACAAGCCCGTGATTGTAGCTTCTCAGCTTCTTGAGTCAATGGTTGAGTATCCAACACCAACACGTGCCGAGGTAGCGGATGTTTCTGAAGCAGTTCGACAGTACGCCGATGCTTTGATGCTGTCTGGTGAGTCAGCTATTGGATCATTTGGACAGAAAGCTTTGGCAGTGTTGGATATGGCTAGCAGTAGAATGGAATCATGGAGCCGTGAGGAAAACAGACAAAATCTTCTCAATCACCACAAACTTGGAGCATCATTGCCAGATTGCATCACTGAGCAAATATGCAATTGTGCTGTTGAAATGGCCAACAACCTGGGTGTGGATGCCATCTTTGTATACACAAAGCATGGATACATGGCATCTCTCCTATCACGCAATCGACCAAATCCTCCAATCTTTGCTTTCACCGATGATGACAACACATGTATGGCTCTGAATTTGCAGTGGGGTGTGGTTCCCCTTCTTGTTGATTTGTCAGATGATGCTGAAGCTAACATCTCAAAATCAGTCCAGCTTATGAAGTCTAAAGGGTTGATCAACAAAGAAGATGTGGTTCTTGTGGTCTCTGACGTTGCTCCAACCCGCACAACCATGGCTTTCCAGTCAATTCAGGTAAAGACTATTATCTAG	1755	0.4393	MAMVFKSMAASASDLSLVRLSNGAGKPPVDLKSRVFGGRVFSLGFCCRGEKWKGNHGVKVRAALQLDVEEPKSKSALEGTLGLDVVSEGELMVKGFKGLRKTKLVCTVGPACSSLEDLEKLALGGMNVARFNMCHGTREWHRDVIRKIKKLNEEKGFSVSVMIDTEGSQIHVVDHGASSSVKVEEGSIWRFTAEHFEGSRPFTVQANYKGFSEGIEVGDELVIDGGMACFEVIEKTGNDLHCKCIDAGLFLPGAKLSFWRDGKLVRRNYNLSAISKKDWADIDFGIAEGVDIFALSFVSHADSVKDLKNYLSTKSTKSIKVLAKIESLESLYNLEAIVQASDGIMVARGDLGVEIPLEQIPTVQEDIIYICRQLNKPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGSFGQKALAVLDMASSRMESWSREENRQNLLNHHKLGASLPDCITEQICNCAVEMANNLGVDAIFVYTKHGYMASLLSRNRPNPPIFAFTDDDNTCMALNLQWGVVPLLVDLSDDAEANISKSVQLMKSKGLINKEDVVLVVSDVAPTRTTMAFQSIQVKTII*	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g0466	584	Gene3D	-	102	432	IPR040442	-
	Lja5g0466	584	SUPERFAMILY	PK C-terminal domain-like	461	568	IPR036918	-
	Lja5g0466	584	ProSitePatterns	Pyruvate kinase active site signature.	319	331	IPR018209	GO:0004743\|GO:0006096
	Lja5g0466	584	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	94	443	IPR015813	GO:0003824
	Lja5g0466	584	Pfam	Pyruvate kinase, alpha/beta domain	467	566	IPR015795	-
	Lja5g0466	584	PANTHER	PYRUVATE KINASE	46	583	-	-
	Lja5g0466	584	TIGRFAM	pyruv_kin: pyruvate kinase	100	583	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja5g0466	584	PRINTS	Pyruvate kinase family signature	321	347	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja5g0466	584	PRINTS	Pyruvate kinase family signature	398	416	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja5g0466	584	PRINTS	Pyruvate kinase family signature	417	433	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja5g0466	584	PRINTS	Pyruvate kinase family signature	373	397	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja5g0466	584	PRINTS	Pyruvate kinase family signature	348	372	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja5g0466	584	PRINTS	Pyruvate kinase family signature	157	173	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja5g0466	584	PRINTS	Pyruvate kinase family signature	290	304	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja5g0466	584	Pfam	Pyruvate kinase, barrel domain	100	440	IPR015793	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja5g0466	584	PANTHER	PYRUVATE KINASE	46	583	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Lja5g0466	584	Gene3D	-	169	271	IPR015806	GO:0004743\|GO:0006096
	Lja5g0466	584	Gene3D	-	433	578	IPR036918	-
	Lja5g0466	584	SUPERFAMILY	PK beta-barrel domain-like	170	257	IPR011037	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g0466	Lja-Chr5	4107457	4111232	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g0466	K00873		-	gmx:100780644	966.452

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja5g0466	5	4107457	4111232	Lja5g0466	5	4107457	4111232	ECH