Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0450 ATGAGATATAGACTTAACCCATTCAAGATGAAGGTTTCTGCAGAAGGCTGCAGCTTGTTGTTCACCACCTCTTTTCTTATACTGATCTCAGGACTCACCGTCCATTCTCTGTCTCACTCTTATGATTATTCTGCTACCACAGAGTGCCTGGCAGAACCTCATAGGGAACACTATGGAGGAGGCATTATAGTAAATCCAGGATTTGATCACAACTTAGAGGGTTGGACAGTGTTTGGAAACGGAGCAATCGAGGAACGAAGATCCAATGAAGGCAATGCATTCATTGTTGCCAGAAACAGAACACAACCTTTGGATAGTTTCTCACAGAAAATCCAACTTAAGAAAGGAATGCTATACACCTTTTCTGCTTGGTTGCAACTCAGTGAAGGAAGTGACACTGTGTCAGTTGTATTTAAAATAAATGGAAGGGAACTGATACGAGGCGGCCATGTGATTGCAAAGCATGGGTGCTGGACTTTGATGAAAGGTGGCTTAGTTGCAAACTTCACAAGCCCTGCTGAGATTCTTTTTGAGAGCAAGAATCCAACAGTGGAAATATGGGCTGATAGTGTATCCTTGCAACCATTCACCAAAGAGCAATGGAGATCACACCAAGAAGAAAGCATTGAGAGAGTACGTAAGAGCAAGGTGAGATTCCAAGTAACTCACATAAACGAAACAGCATTGGAAGGAGCCACAATCACCACCAAACAAACAAAGCTAGACTTCCCATTTGGATGCGGAATAAACAACAATATCCTCACAAATAGTGAATACCAGAAATGGTTTCTGTCAAGATTCAAATACACAACTTTCACCAACCAGATGAAGTGGTACAGCACAGAGATAGTTAAAGGCCAGGAAAACTACACTACACCTGATGCCATGATGTCATTGGCCAAAAACAATGGCATTTCTGTAAGAGGCCATAATATTTTCTGGGATGACCCAAAGCAGCAGCCCCAATGGGTTAAGTCTCTATCTCCTGAGGAATTGAGAAAAGCAGCAGCAAAGAGAATCAATTCTGTGGCTTCAAGATATAGTGGAGAGCTAATTGCTTGGGATGTTGTCAATGAGAATCTCCACTTCAACTTTTTTGAGGGGAATCTTGGTGAAAATGCTTCTGCTGCGTATTACTCAACAGCTCACCATCTTGATCCAAATACCAGAATGTTCCTGAATGAATTTAACACCATCGAATATAGCGGGGATGTTGCTGCCAGCCCAACTAATTATATAAAGAAAATTCAACAGATTCTGCAGTTTCCAGGAAGTGCTGGAATTCCATTAGCAATTGGGTTGCAATGCCATTTTGCTTCTGGCCAGCCAAATCTTGCTTACATGAGAGCAGGTCTTGATCTTCTTGGTGCAACTGGATTTCCAATATGGCTCACAGAAACTAGTATAGACCCACAACCACATCAGGAAGATTATTTTGACTGGATTCTAAGAGAGGGTTATGCTCATCCTGCTGTTCAAGGGATTATAATGTTCATGGGTCCAGTGCAAGCGGGTTTCAAGAAGGCACCCTTAGCAGATGAAAACTTCAAAAATACTCCAATTGGAGATGTTGTAGACATGCTGATTCGTGAGTGGGGAACTGGGCCTCATGAAGCCAAAGCAGATAGCAGAGGAATTGTTGATATTTCACTACATCATGGAGATTATGATGTTATTGTTACACATCCTCAAAAGCAAATCTCCAAAACACTGAATCTAAGTGTAAGGAAAGGATCTCCACAGCAAACCATCCAAGTGAAAATGCATGCCTAA 1773 0.4185 MRYRLNPFKMKVSAEGCSLLFTTSFLILISGLTVHSLSHSYDYSATTECLAEPHREHYGGGIIVNPGFDHNLEGWTVFGNGAIEERRSNEGNAFIVARNRTQPLDSFSQKIQLKKGMLYTFSAWLQLSEGSDTVSVVFKINGRELIRGGHVIAKHGCWTLMKGGLVANFTSPAEILFESKNPTVEIWADSVSLQPFTKEQWRSHQEESIERVRKSKVRFQVTHINETALEGATITTKQTKLDFPFGCGINNNILTNSEYQKWFLSRFKYTTFTNQMKWYSTEIVKGQENYTTPDAMMSLAKNNGISVRGHNIFWDDPKQQPQWVKSLSPEELRKAAAKRINSVASRYSGELIAWDVVNENLHFNFFEGNLGENASAAYYSTAHHLDPNTRMFLNEFNTIEYSGDVAASPTNYIKKIQQILQFPGSAGIPLAIGLQCHFASGQPNLAYMRAGLDLLGATGFPIWLTETSIDPQPHQEDYFDWILREGYAHPAVQGIIMFMGPVQAGFKKAPLADENFKNTPIGDVVDMLIREWGTGPHEAKADSRGIVDISLHHGDYDVIVTHPQKQISKTLNLSVRKGSPQQTIQVKMHA* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0450 590 SUPERFAMILY (Trans)glycosidases 230 536 IPR017853 -
Lja5g0450 590 SMART glyco_10 276 527 IPR001000 GO:0004553|GO:0005975
Lja5g0450 590 Pfam Glycosyl hydrolase family 10 239 475 IPR001000 GO:0004553|GO:0005975
Lja5g0450 590 Gene3D Glycosidases 231 533 - -
Lja5g0450 590 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 235 528 IPR001000 GO:0004553|GO:0005975
Lja5g0450 590 Pfam Carbohydrate binding domain 61 143 IPR003305 GO:0016798
Lja5g0450 590 Gene3D - 51 196 - -
Lja5g0450 590 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 37 587 - -
Lja5g0450 590 SUPERFAMILY Galactose-binding domain-like 59 195 IPR008979 -
Lja5g0450 590 PANTHER GLYCOSYL HYDROLASE 37 587 IPR044846 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0450 Lja-Chr5 3943126 3946831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0450 41 575 Glycoside Hydrolase AT4G33840 51.115 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0450 - - gmx:100777980 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0450 5 3943126 3946831 Lja5g0450 5 3943126 3946831 ECH