Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0447 ATGAAAAGCAATCTTTTGTTCTTATCCCTTTTTCTTTCACTTCTTGTACTTCTTCCAATTCTAACTTCTAGCCAAAAACATGCATGTAATAAGGCCTCTCCTAAAACTAGTAACTTCCCATTTTGCGACACCACCTTATCTTATGAAGCCAGGGCCAAGGACTTGGTGTCACGGTTAACACTCCAAGAAAAGGCACAGCAATTAGTAAACCCTTCTTCCGGTATTGCAAGACTCGGTGTTCCTTCTTATGAATGGTGGTCGGAGGCGCTTCACGGTGTCTCCAATTTAGGACCGGGGACACGTTTTAACAGAACAGTGCCCGGCGCCACTAGCTTCCCAGCAGTGATTCTATCAGCTGCAAGCTTCAATGCAACTCTATGGTACAATATGGGACAGGTTGTGTCAACTGAGGCAAGAGCTATGTACAATGTGGACTTGGCTGGTTTAACATTTTGGAGTCCTAATGTGAATGTGTTCCGCGACCCGAGATGGGGGCGTGGCCAGGAAACTCCAGGGGAGGATCCATTGGTGGTGTCTAGATATGCTGTGAAGTATGTTCGTGGGTTACAAGATGTGGAAGATGAAGAAAGTATTAAAGCTGATAGGCTTAAGGTTTCAAGCTGTTGTAAGCATTACACTGCTTATGATGTTGATAACTGGAAAGGCGTTGATCGCTTCCATTTTGATGCAAAGGTGACCAAGCAAGACTTGGAGGATACTTATCAGCCTCCATTTAAGAGCTGTGTGGTGGAGGGGCATGTTAGCAGTGTCATGTGTTCTTATAATAGGGTGAATGGAATTCCTACATGTGCTGATCCAGACCTCCTCAAAGGGGTGATCAGAGGCCAGTGGGGTCTAGATGGATATATTGTTTCAGATTGTGATTCAGTGCAAGTATATTACGAGTCAATTCATTACACTGCAACTCCTGAAGATGCAGTGGCTCTTGCACTGAAAGCAGGTTTAAACATGAACTGTGGAGACTATCTAAGAAAATACACTGCAAATGCAGTGAAGTTGAAAAAAGTAGATGTATCTACAGTAGACCAGGCCTTGGTGTACAACTACATAGTCCTAATGAGATTAGGCTTCTTTGATAACCCCAAGTCACTTCCATTTGCAAATCTTGGACCATCTGATGTATGTACTAAAGAAAATCAACTATTGGCCCTAGAAGCTGCAAAGCAAGGAATAGTTTTGTTGGAAAATAGTGGGGTTCTTCCCTTATCCAAGACTAACATAAAAAATTTGGCTGTGATTGGACCAAATGCAAATGCCACCACAGTTATGATCAGCAACTATGCTGGTATACCTTGCAGATACACTAGCCCTTTACAAGGACTACAGAAGTACATTTCTTCTGTGACTTATGCACCTGGTTGTGGCAATGTTAAATGTGGTGATCAGAGTCTATTTGCAGCGGCAACCAAGGCTGCAGCACCTGCTGATGCAGTGGTTCTAGTTGTGGGATTAGACCAGTCTATTGAAGCTGAGGGTCTGGACAGAGTGAACCTGACATTACCTGGATTTCAAGAGAAGCTGGTGAAAGATGTTGCTGATGCTACTAAAGGGAAAGTGATTTTGGTCATAATGGCAGCTGGTCCAATTGACATTTCTTTCACTAAAAGTATCAGAAACATTGGGGGGATACTGTGGGTAGGGTATCCTGGTCAAGCTGGTGGGGATGCCATAGCCCAAGTGATATTTGGAGAATACAACCCAGGTGGAAGGTCCCCTTTTACATGGTATCCACAATCTTATGCTGATCAAGTGCCTATGACAGACATGAACATGAGAGCCAACAGCAGTAGAAATTTCCCTGGAAGGACCTACAGGTTTTACAATGGAAACTCCCTCTATGAATTTGGCCATGGATTAAGCTACTCCACATTTTCCACCTACATTGCATCTGCTCCCTCCACCATAATGATTGAGCCGAACACATCCATGTCTCAACCTCATAATAATATCTTTGAGTCTCTATCTGATGGTCAAGCAATTGATATTTCCACCATAAGTTGCTTGGATTTGACATTTTTTCTTGTCATCGGTGTGAAGAACACTGGACCATTTAATGGTTCCCATGTGGTGTTGGTGTTCTGGGAGCCACCAACTTCAGAGTTGGTGACTGGGGCTCCAATTAAGCAATTAATAGGATTTGAAAGAGCACATGTTATGGTGGGGATGACAGAGTTTGTGACATTGGAAATAGATATATGCCAATTGCTAAGTAATGTGGATAGTGATGGGAAAAGAAAGCTGATCATTGGAAAGCACACCCTTTTGGTTGGCTCTTCCAGTGAGACACAGGTTAGGCACCAAATTGATATTAGTCTTTCAGGGAATGGGATGGAGAAGAAGTCATATCTGGATGAATCTATATAA 2385 0.4306 MKSNLLFLSLFLSLLVLLPILTSSQKHACNKASPKTSNFPFCDTTLSYEARAKDLVSRLTLQEKAQQLVNPSSGIARLGVPSYEWWSEALHGVSNLGPGTRFNRTVPGATSFPAVILSAASFNATLWYNMGQVVSTEARAMYNVDLAGLTFWSPNVNVFRDPRWGRGQETPGEDPLVVSRYAVKYVRGLQDVEDEESIKADRLKVSSCCKHYTAYDVDNWKGVDRFHFDAKVTKQDLEDTYQPPFKSCVVEGHVSSVMCSYNRVNGIPTCADPDLLKGVIRGQWGLDGYIVSDCDSVQVYYESIHYTATPEDAVALALKAGLNMNCGDYLRKYTANAVKLKKVDVSTVDQALVYNYIVLMRLGFFDNPKSLPFANLGPSDVCTKENQLLALEAAKQGIVLLENSGVLPLSKTNIKNLAVIGPNANATTVMISNYAGIPCRYTSPLQGLQKYISSVTYAPGCGNVKCGDQSLFAAATKAAAPADAVVLVVGLDQSIEAEGLDRVNLTLPGFQEKLVKDVADATKGKVILVIMAAGPIDISFTKSIRNIGGILWVGYPGQAGGDAIAQVIFGEYNPGGRSPFTWYPQSYADQVPMTDMNMRANSSRNFPGRTYRFYNGNSLYEFGHGLSYSTFSTYIASAPSTIMIEPNTSMSQPHNNIFESLSDGQAIDISTISCLDLTFFLVIGVKNTGPFNGSHVVLVFWEPPTSELVTGAPIKQLIGFERAHVMVGMTEFVTLEIDICQLLSNVDSDGKRKLIIGKHTLLVGSSSETQVRHQIDISLSGNGMEKKSYLDESI* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0447 794 Pfam Fibronectin type III-like domain 695 767 IPR026891 -
Lja5g0447 794 PRINTS Glycosyl hydrolase family 3 signature 279 297 IPR001764 GO:0004553|GO:0005975
Lja5g0447 794 PRINTS Glycosyl hydrolase family 3 signature 205 221 IPR001764 GO:0004553|GO:0005975
Lja5g0447 794 PRINTS Glycosyl hydrolase family 3 signature 112 131 IPR001764 GO:0004553|GO:0005975
Lja5g0447 794 Gene3D - 51 372 IPR036962 GO:0004553|GO:0005975
Lja5g0447 794 SMART Fn3_like_2 695 767 IPR026891 -
Lja5g0447 794 PANTHER BETA-D-XYLOSIDASE 5-RELATED 14 775 - -
Lja5g0447 794 Pfam Glycosyl hydrolase family 3 C-terminal domain 398 628 IPR002772 GO:0004553|GO:0005975
Lja5g0447 794 PANTHER SUGAR HYDROLASE-RELATED 14 775 IPR044993 GO:0009044|GO:0045493
Lja5g0447 794 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 398 631 IPR036881 GO:0004553|GO:0005975
Lja5g0447 794 Gene3D - 383 630 IPR036881 GO:0004553|GO:0005975
Lja5g0447 794 Pfam Glycosyl hydrolase family 3 N terminal domain 107 351 IPR001764 GO:0004553|GO:0005975
Lja5g0447 794 SUPERFAMILY (Trans)glycosidases 39 397 IPR017853 -
Lja5g0447 794 Gene3D Immunoglobulins 676 779 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0447 Lja-Chr5 3929955 3933399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0447 7 782 Glycoside Hydrolase AT3G19620 69.437 0.0 1137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0447 K15920 - gmx:100817869 1353.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0447 5 3929955 3933399 Lja5g0447 5 3929955 3933399 ECH