Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0442 ATGTCCACTTCTTCTCTCTTATCGTCACTCTCTTCCCCCTTCATCCACGATTCTGCACCTGCTCGCCATGGAACGAAGCTCCTTCCTTCTCCTCACTCCATCACCACGCGATGCTCCAAGTATTTTTCTGCTAAGTGCTCCCTCGACCACATCCCCAAGCAGTTCCGGCAGGAAAATCTCAAAGATGGATTGATGGACAACTTCAAGAATGCACCTAAATTTTTATATGGCCTTTCTCCATCACAAATGGACATGTTCATGACCGAAGATAATCCTGCCAGCAAGCAGGCTGAAAGAGTTACAGAGGATAGCATCTCATCTGCCAAGAATTATTTGGATCATGGTGGAATGTGGAGTATGTCTAGCTCGGACAATAATGGCCCTGCAAAATACAGCATGAGTGTTAGTATGTATCGAGGAGGAGGTAGGGGAGGCGGAAGGCCTAGAACTGCTCCCCCGGACCTGCCTTCTCTGCTTTTGGATGCTCGAATATGCTATCTCGGTATGCCGATTGTTCCAGCTGTCACAGAACTTCTTGTTGCTCAATTTATGTGGTTGGATTATGATAACCCTACCAAACCTATTTACTTATATATTAATTCATCTGGAACCCAAAATGAGAAGAATGAGACCGTGGGATCAGAAACTGAAGCCTACTCTATTGCGGATATGATGTCTTATGTCAAAGCTGATGTCTATACTGTGAATTGTGGCATGGCATATGGCCAAGCAGCAATGCTTCTCTCACTTGGAGCAAAGGGTTATCGCGCTCTACAGCCAAATTCATCCACAAAATTATATCTTCCAAAAGTTAACAGATCAAGTGGTGCTGCTATAGACATGTGGATTAAGGCAAAAGAGTTGGAAGCGAATTCTGATTATTACATTGAGCTGTTGGCGAAAGGAATTGGGAAATCAAAGGAAGAAGTTGCTAAAGATGTCCAGAGGCCTAGATATTTTCAACCAAAGGAAGCCATAGAGTACGGAATCGCTGACAAAATAATTGATTCTCAGGATGCTGCATTTGAGAAGCGGAATTATGATGAAATGCTTGCTCAATCAAGAGCTATGAGGAAACAAGCTGGTGGCAATCCTCAAGCAGCTCCTTCAGGATTTAGGTAA 1122 0.4385 MSTSSLLSSLSSPFIHDSAPARHGTKLLPSPHSITTRCSKYFSAKCSLDHIPKQFRQENLKDGLMDNFKNAPKFLYGLSPSQMDMFMTEDNPASKQAERVTEDSISSAKNYLDHGGMWSMSSSDNNGPAKYSMSVSMYRGGGRGGGRPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSSGTQNEKNETVGSETEAYSIADMMSYVKADVYTVNCGMAYGQAAMLLSLGAKGYRALQPNSSTKLYLPKVNRSSGAAIDMWIKAKELEANSDYYIELLAKGIGKSKEEVAKDVQRPRYFQPKEAIEYGIADKIIDSQDAAFEKRNYDEMLAQSRAMRKQAGGNPQAAPSGFR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0442 373 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 40 365 IPR023562 -
Lja5g0442 373 Pfam Clp protease 156 337 IPR023562 -
Lja5g0442 373 PRINTS Clp protease catalytic subunit P signature 154 169 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja5g0442 373 PRINTS Clp protease catalytic subunit P signature 194 214 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja5g0442 373 PRINTS Clp protease catalytic subunit P signature 313 332 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja5g0442 373 PRINTS Clp protease catalytic subunit P signature 234 251 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja5g0442 373 CDD S14_ClpP_2 154 334 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lja5g0442 373 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 40 365 - -
Lja5g0442 373 Gene3D - 142 342 - -
Lja5g0442 373 SUPERFAMILY ClpP/crotonase 150 340 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0442 Lja-Chr5 3881731 3886017 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0442 K01358 - gmx:100820008 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0442 5 3881731 3886017 Lja5g0442 5 3881731 3886017 ECH