Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0440 ATGAAGTTTATGAAACTTGGTTCCAAGCCAGATACCTTTCAGACTGATGGGAACAATGCGAGGTATGTGGCAAGTGAGTTATCATCAGATATAATTGTCAGTATAGGGGATATAAAGTTCTACTTACACAAGTTTCCTCTTATATCAAAGAGTTCTCACTTGCAGAAGTTGATCTCTCTCAGTAATGAAGAAAACATGGATGAAGTTCACATTCCTGACATTCCTGGTGGCGCAAGTGCCTTTGAGACATGTGCTAAGTTTTGCTATGGCATGGCAGTTACACTCAATGCATACAATGTAATTGCAACTCGATGTGCTGCAGAGTATCTTGGAATGCATGAGACCATTGAGAAAGGGAACCTTATTTACAAGATTGATGTTTTCCTTAGCTCTAGCATTTTCCGTAGTTGGAAGGATTCGATCATCCTTCTTCAGGCTTCAAAGTCCATGCTACCCCTGGCTGAGGATCTAAAGGTGGTGAGCCATTGCATTGAGTCTATAGCAAATAAGGCATGTGTTGATGTATCCAAAGTTGACTGGTCCTACTCCTATAACCGGAAAAAGCTTCCAGAGGAAAACGGGGCTGAGACAAACCAGAATGAAGTCAGAACTCGAAAAGTGCCGAGAGATTGGTGGGTTGAAGATTTATGTGAGCTTGAAGTTGATTTGTACAAGTCTGTAATTACAAATATTAAAACCAAGGAAGTTCAATCCAATGATGTAGTTGGCGAAGCTTTGAAAGCTTATGCTTACAGAAGATTGCCGAATTTCAGCAAGGGTATGATCCGGTGTGGGGATGCGTCAAAGCATCGCTTGATAGTTGAAACTATTGTGTGGTTGTTGCCTGCTGAGAAAGGCAGTGTTTCTTGTAGGTTCTTGCTCAAGTTATTGAAAGCTGCCATTTTTGTAGAATCAGGAGATAGGACTAAAGAAGAGCTTGTAAAGAGAATAGGGCAGCAACTAGAGGAGGCTTCTGTGAGTGATATTTTGATTCAAGGATCAGATGGAGAGGCTACTATCTATGATGTTAGTATAGTATATAAAATTGTAAGGGAGTTTGTTATGAAGGATCACAATGCTGAGATTGAATCAGTTGTAGATGGTGAACCTGAGGGGATAAGAAAGCCAGGGATTTTATCAGATGCTTCCAAGCTGATGGTTGCGAAACTCATAGATGCATACCTTGCCGAAATTGCAAAGGATCACAATTTACATTTGTCAGATTTTGTTAATCTTGCTGAGTTGGTGTCCAGCACCTCTCGTCCTAACCACGATGGCCTTTACAGGGCTATTGACACATATCTGAAGGAGCACCCTGGGATCAGCAAAGGTGAAAAGAAGAGGATATGCAATCTGATGGACTGCAAAAAGCTATCGGTTGACGCGTGCTTGCACGCTGTGCAAAATGAGAGGCTACCATTACGGGTAGTCGTGCAGGTACTATATTTTGAGCAGTTGAGGACTGCTGCATCCTCAGGTACTAGCACTCCTGACATACCTAAAGGAATGAAAGATTTGAGCAATGGATCCAATGGTAGCTCAAGGTCAGGGACAACTAACCCAGATGATGACTTGGATGCTGCATCCAAAGCGGAGGAGCTGAAGGCATTAAGAAAGGAACTTGCATCGTTGAGACTGAGTAATGGAGTTAAAGATGGAGATAGCAGCAAACCCAGCATGGACAAGGCTGTGATTGGCAAGATGAAAGGGTTGCTCAAGTCAAAGAAGTCATTCATAAAGCTCTGGGCTAGCAAAGGGGGACAAGGGGAGAACAGTGGCTCAGACTCATCAGAGAGTATTGGTTCTGCTAACCCAGAAGAAGCCAAATCTACCCCTTCCAGAAATAGGAGGCACTCAGTTTCATGA 1866 0.4282 MKFMKLGSKPDTFQTDGNNARYVASELSSDIIVSIGDIKFYLHKFPLISKSSHLQKLISLSNEENMDEVHIPDIPGGASAFETCAKFCYGMAVTLNAYNVIATRCAAEYLGMHETIEKGNLIYKIDVFLSSSIFRSWKDSIILLQASKSMLPLAEDLKVVSHCIESIANKACVDVSKVDWSYSYNRKKLPEENGAETNQNEVRTRKVPRDWWVEDLCELEVDLYKSVITNIKTKEVQSNDVVGEALKAYAYRRLPNFSKGMIRCGDASKHRLIVETIVWLLPAEKGSVSCRFLLKLLKAAIFVESGDRTKEELVKRIGQQLEEASVSDILIQGSDGEATIYDVSIVYKIVREFVMKDHNAEIESVVDGEPEGIRKPGILSDASKLMVAKLIDAYLAEIAKDHNLHLSDFVNLAELVSSTSRPNHDGLYRAIDTYLKEHPGISKGEKKRICNLMDCKKLSVDACLHAVQNERLPLRVVVQVLYFEQLRTAASSGTSTPDIPKGMKDLSNGSNGSSRSGTTNPDDDLDAASKAEELKALRKELASLRLSNGVKDGDSSKPSMDKAVIGKMKGLLKSKKSFIKLWASKGGQGENSGSDSSESIGSANPEEAKSTPSRNRRHSVS* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0440 621 Pfam BTB/POZ domain 26 118 IPR000210 GO:0005515
Lja5g0440 621 MobiDBLite consensus disorder prediction 491 525 - -
Lja5g0440 621 ProSiteProfiles NPH3 domain profile. 210 487 IPR027356 -
Lja5g0440 621 SUPERFAMILY POZ domain 21 117 IPR011333 -
Lja5g0440 621 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 618 IPR029960 GO:0009958
Lja5g0440 621 MobiDBLite consensus disorder prediction 506 523 - -
Lja5g0440 621 MobiDBLite consensus disorder prediction 587 609 - -
Lja5g0440 621 PANTHER OS12G0117600 PROTEIN 1 618 IPR043454 -
Lja5g0440 621 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Lja5g0440 621 Pfam NPH3 family 210 463 IPR027356 -
Lja5g0440 621 MobiDBLite consensus disorder prediction 584 621 - -
Lja5g0440 621 Coils Coil 527 547 - -
Lja5g0440 621 Gene3D Potassium Channel Kv1.1; Chain A 9 121 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0440 Lja-Chr5 3845174 3849197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0440 8 493 EF-hand Containing Proteins AT3G44820 36.609 7.83e-104 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0440 - - gmx:100807318 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0440 5 3845174 3849197 Lja5g0440 5 3845174 3849197 ECH