Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0436 ATGACGGTGCCGAAGCGAAGCTATATTCGAGTTGACACTCTCAAGCTGAAGGCTCTGATTGTTCGGAAGGTTGGTCAGCAGAGAGCTGGCAAGTACTTTGGTCAGCTTGGAAGGTTGTTGAGTTCAAAGATTAGCAAATCTGAGTTTGACAGGGTTTGCATCAGGACAATTGGGAGGGAAAATATCCCTCTTCACAATCAGTTCATCAAAGCAATTCTCAAGAATGCTTGTTCGTCTAAAGTCCCGCCTCCGAGAGGTCCTGCAAGGATAGGGAGTGCCTTAAGTGGGAGGGATTCGAATGGGCTGCAGCAAAGCTCTGTTCAAATACCGTATGGGGATGCAGTTCCTTCTTTGTTGCGGAAGGATGGCTCTGTGGCTCCCCGGGAGCAAAAGTTCAAGGGCCGGCGAAATGGTTTTGGACTGCTGGGTAAGCCGCAAAGTCTTACACCGGAAGAATTGATCGACAAGGCTCAACAGCAGCAGAGTGCAACAGAGCTGAATTCCCTTGGCAGCAGACCTCCTATTTCTGTTGAAGAGGGTGAAGAGGTTGAACAGATGGCCAGAAGCCCCAGCATCCAAAGCAGGAGCCCAGTTACAGCTCCCCTTGGTATATCCATGAATTTCGGTCATGGACGTAAACTTCTTTCCAACGTATTAGGTAGCAAATGTCATCCAGATACCTGTCAAAGCAGTGGGGATCTCCCTGACACAAGATCTTTGAGGAGTCGGTTGGAGCAAAAGTTGGAGAAGGAGGGTTTAACTGTGACAGTGGATTGTGTAAATCTATTGAATAACGCGCTGGATTCATATCTCAAGAGATTGATTGAATCCTCTATAGGTTTGGCTGGGTCAAGATCTGGAAGTGAGTACCTAAGAATGCGAAACCGACAGTCAGTAACTGGTTCAAATGTATTGCTACCTGCAAGATACATGCAAACAGCAACACAGTCTGCTGGTGTATCTGTCTCCGATTTTCGTGTTGCTATGGAGTTAAATCCACAAGTTCTAGGACCAGATTGGCCCATACAGCTTGAGAAAATTTGCATCTGCGCTTCTGAAGAAAGAAGCCAGTGTTCTCAGTAG 1083 0.4709 MTVPKRSYIRVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRENIPLHNQFIKAILKNACSSKVPPPRGPARIGSALSGRDSNGLQQSSVQIPYGDAVPSLLRKDGSVAPREQKFKGRRNGFGLLGKPQSLTPEELIDKAQQQQSATELNSLGSRPPISVEEGEEVEQMARSPSIQSRSPVTAPLGISMNFGHGRKLLSNVLGSKCHPDTCQSSGDLPDTRSLRSRLEQKLEKEGLTVTVDCVNLLNNALDSYLKRLIESSIGLAGSRSGSEYLRMRNRQSVTGSNVLLPARYMQTATQSAGVSVSDFRVAMELNPQVLGPDWPIQLEKICICASEERSQCSQ* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0436 360 MobiDBLite consensus disorder prediction 80 103 - -
Lja5g0436 360 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 9 281 IPR024738 GO:0070461
Lja5g0436 360 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 5 354 - -
Lja5g0436 360 PANTHER TRANSCRIPTIONAL ADAPTER 1 5 354 IPR024738 GO:0070461
Lja5g0436 360 MobiDBLite consensus disorder prediction 156 171 - -
Lja5g0436 360 MobiDBLite consensus disorder prediction 156 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0436 Lja-Chr5 3803267 3805306 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0436 - - lja:Lj5g3v2110820.1 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0436 5 3803267 3805306 Lja5g0436 5 3803267 3805306 ECH