Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0422 ATGGCCGTCGACATTCAAACATTGGAAGACAGGTATATTGGTTTTTGCAGGAGTCATGGTGCTTCTCCTAGCCCTGCTATTTTGTCAAGCTTCTACAAGGCTGAGGTCAAAAAATCCCGTCAAGAGCTGTGCGTCCTGGAAATTGTAATTGATGACATCTGTGATTTTGATTTTGCTCCACTTCTTGACACGTGCATGAACCTTGATGCTTCTGAAATAGAAGCTGTTGATGTACGTAATGAATCATCATGTCTATTAAATGGAGAATGTGCATTTTCATTGCTGCGTGCTATTAATCAAAAGCTTCGAGTAGTCGAACTGCAGGACGTGTCATTTGGAAATGACTTCTTACGGGATATCTCGCAAAGGGGTTTGGCATGCCAAGTGTTAACATTGAGGTCATCGCGTTTCCGGAAGCTGAACTTGATGGGCGAGTTCATGCACATGCACACACTTAATCTTGATTTCAGTTCTTCCCTCACTAGTTTTGATGAGGACTGTTTTAATTGCATGCCCAATCTAAGGTGTCTCTCAATGTGCGAAACACGGATTACAAATCTTTGGACAACTGTTGCAGCTCTATCTAAGCTCCCTTCTTTGGTTGAGCTAAGGTTTCAATATTGGCAGTATTGTAGTGATTCTGGGTCATCTTTTAACTTATCCAGTGGGAATTCAGATAGCACTGCTGATTTTAATCTGCTTGAAAGAGTTCCTTTTGTTGGTGAATTCTGCACCGATACAAGGGAACTGACAGATCCTAATGCTGAAGACCCACTGAGAAATTTTTACTCATTTGGTGAAGAAGCTATAGATCATGATATTCAAAGCATGGTTGAGGATTCATCAGATGATAGTGAAATTGGTTGTACTAGGCATCATCATAGATCCTGGTTGTCAGATGTGTTTCCTGGATGGAATTTACAAGTGCCTCTTCAGAATGAGTTCACATTACGGAATGAAGATGAAGAAGATTCATCACAAGGTTCTTTTACAGGCCATATTGCTGATGTTTCTATGAAGTATATGTCTCGTCATGCATCACCAATATGTCATGAGAAACATTACAGAGAATTCATGATAGCTTCACTGCCAAATCTGAAAAATTTAGATAACGTGCCCATCAGAAAAACTGACAAGGAAAGGGCTACTGGAATATTTTCTGAATACTTTGAATATCTTCCATACAGATGGAAGCACAAAGAGAGTGTTGTAAGTATCTTACAGAAACGAGAAATAAAATCAGGCCACATTAAGGTGCAATCTTCTAAGCGTAGCCCACCGTATCCTTCCGGAAATTCCCAATATTTTTATACGAGGTCTCTTTCTGCTGCTAAATTGGGGTCTTCAACTTGGCCCTTTTTGCATCCCCTTTCTCTATTAGGATGTGATTTGGGTAAGGGTTTTCGTCCAAGGCAGTTTGAGTATCACCCATCTGACTCCAGCTTGATGGTCTTTGGAACTTTAGATGGTGAAGTAGTTGTGATCAATCATGAGAATGAACATATTGTGAGTTATATTCCATCACTTGGAGCAATGAATAGTGTCTTGGGTCTCTGTTGGCTCAAGAAATATCCCTCAAAGCTTATAGCAGGTTCAGACAATGGTTCCCTGAAATTGTATGATATCCACCAAGTTCCAAGAAAAATTACTAGCATATATGGGAATTCTGGTTGTGTTACCTTCGATGAATTTGACCAGTTGACATCAGTTCATGTTAATGCTACGGACGAACTATTTCTTGCAAGTGGTTACTCAAAAAATGTTGCGTTGTATGACATCAACAGTGGAAAGCGCTTGCAAGTGTTCACAGATATGCATCAAGGGCATATTAATGTAGTTAAGTTTGCAAATCATTCCCCATCAATTTTTGCCACTTCATCTTTTGATCAGGATGTCAAGATGTGGGACTTGAGACAGAAACCAATACACCCTTGCTTCACTGCTTCAAGCTCTAAAGGAAATGTGATGGTTTGCTTTTCTCCAGATGACCAATATATTCTTGCATCAGCAGTTGATAATGAGGTTAGACAATTTCTGGCTGTTGATGGTAGGCTTCACTTAGTTTTCGATATAGCTCCCACCGAGAGTTCTCAAAATTACACCCGTTCTTATTACATGAATGGGAGGGACTACATTATAAGTGGGAGTTGTGATGAACACATCGTCCGTATTTGCTGTGCTCAAACAGGGAGGCGCCTGAGAGATATTTCCCTGGAGGGAAGAAGTTTAGGAAGTTCCATGTTTGTTCAATCTTTGAGGGGTGACCCTTTCCGGGATTTCAACATGAGTGTGTTAGCAGCCTACATGCGGCCAGGCTCCAAGTCCGAAATTGTTAAGGTCAATTTACTAGCATCTAGTGGTGATGCAGAAGATGACTCTGATGACCAGCGCCCTTGCCTGTCCCACAGTATGGGAGCTTGA 2421 0.4097 MAVDIQTLEDRYIGFCRSHGASPSPAILSSFYKAEVKKSRQELCVLEIVIDDICDFDFAPLLDTCMNLDASEIEAVDVRNESSCLLNGECAFSLLRAINQKLRVVELQDVSFGNDFLRDISQRGLACQVLTLRSSRFRKLNLMGEFMHMHTLNLDFSSSLTSFDEDCFNCMPNLRCLSMCETRITNLWTTVAALSKLPSLVELRFQYWQYCSDSGSSFNLSSGNSDSTADFNLLERVPFVGEFCTDTRELTDPNAEDPLRNFYSFGEEAIDHDIQSMVEDSSDDSEIGCTRHHHRSWLSDVFPGWNLQVPLQNEFTLRNEDEEDSSQGSFTGHIADVSMKYMSRHASPICHEKHYREFMIASLPNLKNLDNVPIRKTDKERATGIFSEYFEYLPYRWKHKESVVSILQKREIKSGHIKVQSSKRSPPYPSGNSQYFYTRSLSAAKLGSSTWPFLHPLSLLGCDLGKGFRPRQFEYHPSDSSLMVFGTLDGEVVVINHENEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLKLYDIHQVPRKITSIYGNSGCVTFDEFDQLTSVHVNATDELFLASGYSKNVALYDINSGKRLQVFTDMHQGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPIHPCFTASSSKGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCDEHIVRICCAQTGRRLRDISLEGRSLGSSMFVQSLRGDPFRDFNMSVLAAYMRPGSKSEIVKVNLLASSGDAEDDSDDQRPCLSHSMGA* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0422 806 SMART WD40_4 545 592 IPR001680 GO:0005515
Lja5g0422 806 SMART WD40_4 595 636 IPR001680 GO:0005515
Lja5g0422 806 SMART WD40_4 499 541 IPR001680 GO:0005515
Lja5g0422 806 SMART WD40_4 641 679 IPR001680 GO:0005515
Lja5g0422 806 SUPERFAMILY L domain-like 127 213 - -
Lja5g0422 806 MobiDBLite consensus disorder prediction 787 806 - -
Lja5g0422 806 Gene3D Ribonuclease Inhibitor 329 391 IPR032675 -
Lja5g0422 806 PANTHER BNAC09G30780D PROTEIN 1 792 IPR046377 GO:0071493|GO:0080008
Lja5g0422 806 SUPERFAMILY WD40 repeat-like 467 736 IPR036322 GO:0005515
Lja5g0422 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 638 IPR001680 GO:0005515
Lja5g0422 806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 603 638 - -
Lja5g0422 806 SMART LRRcap_2 352 370 IPR003603 -
Lja5g0422 806 Gene3D Ribonuclease Inhibitor 91 231 IPR032675 -
Lja5g0422 806 Gene3D - 468 754 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0422 522 685 Miscellaneous Gene Families AT5G08390 27.108 1.12e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0422 - - gmx:100806443 1345.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0422 5 3719941 3725909 Lja5g0422 5 3719941 3725909 ECH