Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0419 ATGCTTCCATTGTCTCTTCACTTCACCCAGAAGTTCAAACATTGCTATCTTCTTCCCTTTCGCTCTTCGTGTTCCATAGTTGATCACACTCCTACCACCTTCACAAACCTCTTACAGGGCCACATTCCGCGTTCTCATCTTCTCCAAATCCATGCACGCATTTTCCAACTCGGCGCACACCAAGACAATCTCCTCGCTACGCGCCTCATTGGCCACTACCCACCTCGCATTGCTCTCAGGGTCTTTCACTATCTACACAATCCAAACATCTTCCCTTTCAACGCCATCATCAGAGTCCTCGCTGAACAGGGTCACGTTTCCCATGTCTTCTCACTGTTCAACGATTTGAAGCACCGTGTACTTGCACCCAATGACTTCACCTTCTCTTTTCTCCTTAAGGTTTGCTTTCGGTCCAAAGATGCTCGTTGTGCTGAACAGGTTCATGCCCACATTCAGAAGATGGGTTATCTCAATGACCCTTCTGTTAGTAATGGGTTGGTTGCAGTGTATGCTAGAGGCTTTCGTAATGTGGTGTTTGCACGTAAAGTGTTTGATGAAATTCCTGATAGAAGTGAAGTTACATGCTGGACTTCTTTGATCACTGGTTATGCTCAGTCTGGTCATGGTGAGGAGGTTTTGCAGCTTTTCCACATGATGGTTAGGCAGAACTTGCGTCCCCAAAATGATACCATGGTTAGTGTTTTATCAGCTTGCTCTAGCCTTGAGATATCAAAAATTGAGAGATGGGTTTACTTTCTTTCAGAATTGATTGATGATAGCACGAGTAATGGAGAAAGCTGTCATGATTCGGTTAACACGGTTTTAGTCTATTTGTTTGGGAAATGGGGGAATGTTGAGAAGAGTAGAGAAAGGTTTGACCGAATTTCTGCTGCAGGAAAAAGAGGTGTGGTTCCTTGGAATGCTATGATAAGTGCATATGTTCAGGATGGTTGCCCTGTGGAGGGTTTAAGTCTTTTTCGGATTATGGTAAAAGAAGGAACCACTAGACCTAACCACGTTACAATGGTTAGTGTCCTGTCAGCCTGTGCTCAAATTGGTGATTTGAGTCTTGGCAAATGGGTTCATGAATACCTTATATCCATAGGACATAAAGGTAACATTGGTTCAAACCAAATTCTGGCGACATCTTTAATTGACATGTATTCTAAATGTGGCAGATTGGATAGGGCAAAGGAAGTTTTTGAGCATGCAGTCTCCAAAGATGTTGTCTTGTTTAATGCAATGATCATGGGTCTTGCTGTAAACGGTGAAGGAGAGGATGCATTGAGACTCTTCTACAAAATGCCAGAATTTGGCTTGCAACCCAATGCTGGAACATTTCTTGGTGCTCTGAGTGCATGCAGTCACTCTGGGTTCTTGGAGAGAGGACGTCAGATTTTCAGAGACATGAGCTTTTCCACTTCTCTTACATTGGAACATTATGCTTGTTACATTGATCTCCTTGCAAGAGTGGGATGCATTGAAGAAGCTATTGAAGTTGTGACTTCCATGCCTTTCAAGCCTAACAATTTTGTCTGGGGTGCTCTGCTTGGAGGTTGTTTGCTCCACTCTAGAGTTGAGTTGGCTCAAGAGGTTTCGAAGAGGCTTGTTGAAGTAGACCCAACTAGTTCTGGAGGCTATGTTATGTTAGCTAATGCACTTGCTTCTGATAGGCAATGGAATGATGTCTCAGCACTGCGGTTGGAAATGAGAGAGAAGGGCATCAAGAAGCAGCCAGGAAGTAGCTGGATTAGTGTGGATGGAGTTGTACATGAATTTCTTGTTGGCTATTTGTCTCATCCTCAAATTGAGGGCATTTATCTTACATTGACTGGATTGGCGAAGCATATGAAAGCACCAAGCCATTGTCAATCAGTGAGCTGTTACTAG 1890 0.4365 MLPLSLHFTQKFKHCYLLPFRSSCSIVDHTPTTFTNLLQGHIPRSHLLQIHARIFQLGAHQDNLLATRLIGHYPPRIALRVFHYLHNPNIFPFNAIIRVLAEQGHVSHVFSLFNDLKHRVLAPNDFTFSFLLKVCFRSKDARCAEQVHAHIQKMGYLNDPSVSNGLVAVYARGFRNVVFARKVFDEIPDRSEVTCWTSLITGYAQSGHGEEVLQLFHMMVRQNLRPQNDTMVSVLSACSSLEISKIERWVYFLSELIDDSTSNGESCHDSVNTVLVYLFGKWGNVEKSRERFDRISAAGKRGVVPWNAMISAYVQDGCPVEGLSLFRIMVKEGTTRPNHVTMVSVLSACAQIGDLSLGKWVHEYLISIGHKGNIGSNQILATSLIDMYSKCGRLDRAKEVFEHAVSKDVVLFNAMIMGLAVNGEGEDALRLFYKMPEFGLQPNAGTFLGALSACSHSGFLERGRQIFRDMSFSTSLTLEHYACYIDLLARVGCIEEAIEVVTSMPFKPNNFVWGALLGGCLLHSRVELAQEVSKRLVEVDPTSSGGYVMLANALASDRQWNDVSALRLEMREKGIKKQPGSSWISVDGVVHEFLVGYLSHPQIEGIYLTLTGLAKHMKAPSHCQSVSCY* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0419 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Lja5g0419 629 PANTHER - 38 622 - -
Lja5g0419 629 Gene3D Tetratricopeptide repeat domain 378 593 IPR011990 GO:0005515
Lja5g0419 629 TIGRFAM PPR: pentatricopeptide repeat domain 382 410 IPR002885 -
Lja5g0419 629 TIGRFAM PPR: pentatricopeptide repeat domain 195 226 IPR002885 -
Lja5g0419 629 TIGRFAM PPR: pentatricopeptide repeat domain 410 444 IPR002885 -
Lja5g0419 629 TIGRFAM PPR: pentatricopeptide repeat domain 306 334 IPR002885 -
Lja5g0419 629 TIGRFAM PPR: pentatricopeptide repeat domain 93 124 IPR002885 -
Lja5g0419 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Lja5g0419 629 Gene3D Tetratricopeptide repeat domain 253 377 IPR011990 GO:0005515
Lja5g0419 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Lja5g0419 629 Gene3D Tetratricopeptide repeat domain 135 248 IPR011990 GO:0005515
Lja5g0419 629 Pfam PPR repeat family 193 239 IPR002885 -
Lja5g0419 629 Pfam PPR repeat family 302 350 IPR002885 -
Lja5g0419 629 Pfam PPR repeat family 88 136 IPR002885 -
Lja5g0419 629 Pfam PPR repeat family 407 454 IPR002885 -
Lja5g0419 629 Pfam E motif 523 584 IPR046848 -
Lja5g0419 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Lja5g0419 629 PANTHER OS01G0913400 PROTEIN-RELATED 38 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0419 Lja-Chr5 3713053 3714942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0419 78 618 Glycoside Hydrolase AT3G49170 29.068 1.56e-76 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0419 - - cam:101497595 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0419 5 3713053 3714942 Lja5g0419 5 3713053 3714942 ECH