Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0394 ATGGCCGCCGGAACCACCGCAGTAGCTTCCAAAACCCTCCGACTCCCCTCTCCCTCACTTTCTCTCTCATCAAAACTCCCACTCTCCTCCGCCTTCTCCGTCTCCCTCCGCCGCCACGGCCACCGTTCCCGCCCCCTCGTCGTCCTCGTCTCCGCCTCCCTCGACGCCAAACCCACCGTCCTCGTCGCCGAGAAGCTCGGCGAAGCGGGTCTCAAACTCCTCAAGGACTTCGCCAACGTCGACTGCTCCTACAATCTCACCCCTGAGGAGCTCTGCACCAAGATCTCCCTCTGCGACGCCTTAATCGTCCGCAGTGGCACCAAGGTCAATCGCGAGGTGTTTGAATCCTCCGCTGGTAGGCTCAAGGTCGTTGGAAGAGCTGGCGTCGGAATCGACAACGTGGATCTCGCCGCCGCCACTGAGCATGGATGTTTGGTTGTCAATGCCCCCACCGCCAACACTGTTGCTGCCGCTGAGCACGGTATTGCCCTCCTCGCCGCCATGGCCAGGAACGTTGCTCAAGCTGATGCCTCTGTTAAAGCTGGGAAATGGCAGAGAAGCAAGTATGTTGGAGTGTCCATGGTTGGGAAGACACTAGCTGTGTTGGGATTTGGGAAGGTTGGCACTGAGGTTGCTCGTCGTGCCAAGGGGCTTGGTATGAATGTCATTGCACATGATCCTTATGCCCCTGCGGATCGTGCTCGTGCTATTGGTGTGGAGCTTGTGAGCTTTGATGAGGCCCTTGCCTCTGCGGATTTCATTTCTCTGCATATGCCTCTTACTCCTGCTACTTCAAAGATGCTCAATGATGAGACTTTTGCCAAGATGAAGAAAGGAGTTCGAATTGTGAACGTTGCTCGTGGAGGGGTCATCGATGAGGATGCTCTTGTTAGGGCTTTGGACTCAGGAATTGTAGCTCAGGCGGCTCTTGATGTTTTCACTGAGGAGCCACCAGCAAAAGACAGCAAGTTGGTTCTTCATGAGCAAGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTGGTTGGGGCATTGAGAGGGGAGCTTGCCGCTACTGCAGTCAATGCACCAATGGTCCCCTCAGAGGTGATAACTGAGTTAAAACCATTTGTTGATCTTGCTGAGAAACTAGGGAGATTGGCTGTCCAGCTGGTAGCGGGAGGAAGCGGTGTAAAAACAGTGAAAGTGACTTATGCTTCTGCAAGGGCCCCTGATGATCTTGACACCCGTCTTCTTCGTGCCATGATAATCAAGGGTCTGATTGAGCCCATATCCAGTGTTTTTGTGAACTTGGTTAATGCTGATTTCACTGCTAAACAAAGAGGGCTCAGGATAACTGAGGAGAGGGTCATTCTTGATGGTTCACCTGAGAATCCACTCGAGTTCATCCAGGTCCAGATTGCCAATGTGGAATCCCGATTCGCCAGCGCCATATCAGAATCCGGCGAGATTAAGGTTGAGGGCCGGGTGAAAGATGGCATCCCCCATCTGACAAAGGTTGGATTTTTTGAAGTTGATGTGAGTTTGGAAGGCAGCATTATCCTCTGCAGGCAGGTAGATCAGCCAGGGATGATCGGAAAGGTGGGGAGCGTTCTGGGTGAGGAGAATGTGAATGTGAGCTTCATGAGTGTAGGAAGGATTGCTCCTCGTAAACAAGCTGTGATGGCAATTGGAGTGGATGAGCCACCTACCAAACAAACTTTGAAGAAGATTGGGGACATTCCTGCTGTTGAAGAATTCGTTTTCCTTAAATTGTAA 1800 0.5228 MAAGTTAVASKTLRLPSPSLSLSSKLPLSSAFSVSLRRHGHRSRPLVVLVSASLDAKPTVLVAEKLGEAGLKLLKDFANVDCSYNLTPEELCTKISLCDALIVRSGTKVNREVFESSAGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRSKYVGVSMVGKTLAVLGFGKVGTEVARRAKGLGMNVIAHDPYAPADRARAIGVELVSFDEALASADFISLHMPLTPATSKMLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTEEPPAKDSKLVLHEQVTATPHLGASTMEAQEGVAIEIAEAVVGALRGELAATAVNAPMVPSEVITELKPFVDLAEKLGRLAVQLVAGGSGVKTVKVTYASARAPDDLDTRLLRAMIIKGLIEPISSVFVNLVNADFTAKQRGLRITEERVILDGSPENPLEFIQVQIANVESRFASAISESGEIKVEGRVKDGIPHLTKVGFFEVDVSLEGSIILCRQVDQPGMIGKVGSVLGEENVNVSFMSVGRIAPRKQAVMAIGVDEPPTKQTLKKIGDIPAVEEFVFLKL* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0394 599 CDD PGDH_4 60 362 - -
Lja5g0394 599 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 380 483 IPR045626 -
Lja5g0394 599 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 338 IPR036291 -
Lja5g0394 599 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 60 369 IPR006139 GO:0016616|GO:0051287
Lja5g0394 599 PANTHER FORMATE DEHYDROGENASE 1 29 594 - -
Lja5g0394 599 SUPERFAMILY ACT-like 518 596 IPR045865 -
Lja5g0394 599 ProSiteProfiles ACT domain profile. 527 599 IPR002912 -
Lja5g0394 599 SUPERFAMILY Serine metabolism enzymes domain 375 521 IPR029009 -
Lja5g0394 599 Pfam ACT domain 527 589 IPR002912 -
Lja5g0394 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 276 292 IPR029753 -
Lja5g0394 599 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 162 337 IPR006140 GO:0051287
Lja5g0394 599 Gene3D - 526 599 - -
Lja5g0394 599 Gene3D - 153 335 - -
Lja5g0394 599 Gene3D - 62 362 - -
Lja5g0394 599 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 57 190 - -
Lja5g0394 599 TIGRFAM PGDH: phosphoglycerate dehydrogenase 60 597 IPR006236 GO:0004617|GO:0006564
Lja5g0394 599 CDD ACT_3PGDH-xct 528 599 - -
Lja5g0394 599 Gene3D - 374 525 IPR029009 -
Lja5g0394 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 199 226 IPR029752 -
Lja5g0394 599 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 247 269 IPR029753 -
Lja5g0394 599 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 29 594 - -
Lja5g0394 599 SMART AdoHcyase_NAD_2 187 341 IPR015878 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0394 Lja-Chr5 3522055 3525256 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0394 K00058 - gmx:100808771 997.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0394 5 3522055 3525256 Lja5g0394 5 3522055 3525256 ECH