Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0388 ATGATGCAAACCAATACGGCAATACCACCTTCTGATTCTGAAGGATCACCAAAACAATATCATCCCATATATCTTTCCTCACATCTCCAAATCACACACCAAAAAAGCTCCAATATGCAAAACCTCATATTTCTCTGCCTCACTATTATTTTCCTTCCCCTGCTTCACTTTCACCATGTGCAAGCTCTCACTTCAGCTTCAGATATTGCAGCACTCAAGGCTTTCAAGGCCTCAATCAAACCCTCTTCAATCGCACCCTGGTCATGCCTAGCATCATGGAACTTCACCATCGACCCTTGCTCACTCCCTCGCCGAACCCACTTCATCTGCGGCCTCACCTGCACCGCCACCACCACCACCAACAACATCAACCAAATCACCCTCGACCCTGCAGGCTACTCTGGCTCACTCACCCCACTCATCTCTCAACTCACCCAACTCGTCACACTAGACCTCGCTGAAAACTCCTTCTCCGGCCCAATCCCCTCTTCACTCTCTTCCCTCTCCAACCTCAAAACCTTAACTCTCCGATCCAATTCCTTCTCTGGTTCAATCCCTCCCTCCATAACCACCCTCAAATCGCTATATTCTCTGGACTTTTCACACAATTCCCTATCTGGGTCTCTCCCAAACTCCATGAATTCCCTCATCAACCTCCGCAGAATCGATCTCAGCTTCAACAAATTAACCGGTTCGATCCCCAAATTACCACCCAACTTGCTAGAACTCGCTGTCAAGGCCAATTCATTATCCGGGCCTCTCCAGAAAGCAACCTTCGAGGGGCTGAACCAGTTGGAAGTAGTGGAGCTCAGTGAGAACACACTCGCCGGAACAGTGGAACCGTGGTTCTTCCTCTTGCCATCGCTGCAGCAGGTGGATTTGTCAAACAACAGCTTCACCGGCGTTCAGATCTCAAGACCCGCGCGTGGGGAAGGTAGCAACCTCGTGGCGGTGAACCTCGGATTTAACAGAATCCAAGGTTACGCGCCCGCGAATCTCGCCGCGTATCCTCAACTGTCGTCGCTGTCGATTCGTCACAACTCGCTACGTGGCGCGATCCCATTGGAGTACGGTGGAATCAAGTCCATGAAGAGGTTGTTCCTGGACGGGAACTTCCTAGACGGGAAGCCGCCGGCCGGGTTGGTAGCCGCCGGCGCGGCGGTTACCGGCAGCTTGGGGGACAATTGTCTGCAGATTTGTCCAGTGTCTTCAAAGCTGTGCACGACCGCACAGAAACCGAGCTCTGTTTGCAAGCAAGCCCACCGTGGAAGACCAACACCGTAG 1284 0.5218 MMQTNTAIPPSDSEGSPKQYHPIYLSSHLQITHQKSSNMQNLIFLCLTIIFLPLLHFHHVQALTSASDIAALKAFKASIKPSSIAPWSCLASWNFTIDPCSLPRRTHFICGLTCTATTTTNNINQITLDPAGYSGSLTPLISQLTQLVTLDLAENSFSGPIPSSLSSLSNLKTLTLRSNSFSGSIPPSITTLKSLYSLDFSHNSLSGSLPNSMNSLINLRRIDLSFNKLTGSIPKLPPNLLELAVKANSLSGPLQKATFEGLNQLEVVELSENTLAGTVEPWFFLLPSLQQVDLSNNSFTGVQISRPARGEGSNLVAVNLGFNRIQGYAPANLAAYPQLSSLSIRHNSLRGAIPLEYGGIKSMKRLFLDGNFLDGKPPAGLVAAGAAVTGSLGDNCLQICPVSSKLCTTAQKPSSVCKQAHRGRPTP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0388 427 Pfam Leucine rich repeat N-terminal domain 66 101 IPR013210 -
Lja5g0388 427 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 48 425 - -
Lja5g0388 427 Gene3D Ribonuclease Inhibitor 65 237 IPR032675 -
Lja5g0388 427 SUPERFAMILY L domain-like 67 378 - -
Lja5g0388 427 SMART LRR_typ_2 192 215 IPR003591 -
Lja5g0388 427 SMART LRR_typ_2 144 168 IPR003591 -
Lja5g0388 427 SMART LRR_typ_2 216 243 IPR003591 -
Lja5g0388 427 SMART LRR_typ_2 286 307 IPR003591 -
Lja5g0388 427 Pfam Leucine rich repeat 238 298 IPR001611 GO:0005515
Lja5g0388 427 Pfam Leucine rich repeat 169 229 IPR001611 GO:0005515
Lja5g0388 427 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 48 425 - -
Lja5g0388 427 Gene3D Ribonuclease Inhibitor 238 412 IPR032675 -
Lja5g0388 427 ProSiteProfiles Leucine-rich repeat profile. 218 240 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0388 Lja-Chr5 3460693 3462590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0388 121 397 Receptor kinase-like Gene Family AT3G56370 29.245 1.42e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0388 - - lja:Lj5g3v2113590.1 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0388 5 3460693 3462590 Lja5g0388 5 3460693 3462590 ECH