Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0252 ATGATGGTCAGCGGCGAAATCGTGATGGATAACAACACCATCAAACTACCGGAATCGGCGGTGGAGATGCCTCTCTCCGCCATCACGGAGGCTTTTGAGGATCTTGTGAAATGGGTTAATAATGGTTCTGAAGATATTCGCTTGGACAAGTTTTGTGAGGTTGCTTCTCTTGTTTCTGTTCTCTTCCGTTCTCTTGGCCTTGCTTTCAAATTCGCTGAAATGGAATACGTCGCCAAGCTACATGGACTAGTGGAAGCATCAAAGACGTGTCACACTCTGCCTGATATACTTGACCGTGATGTCGCCAATGACACAGTGAGAACATCAGGAAGCTTTTCACGTAATCTGCGTAGAGTTCGGCAGGGCCTTGATCTTGTCAGAGCTATCTTCGAGCAACTTTTGACAACTGATGACAGCTCTCTAAGAGAAGTGGCCACAACAGCTTATGGACAGGTTTGCGCTCCGTTTCACACATGGGCAGTAAGAACAGCTGTTTATGCTGGGATGTATACACTTCCAACAAGAGACCAACTTTTGGCGAAGCTCAATGAAACAGAGCAATCAGCTGAGAAGAAGATGAGAAGGTACATTAATGCCTCACTTCCAGTCATAGAATACATTGATAGACTGTACCTTTCTCGAAACATTGCACTGGACTGGTGA 663 0.457 MMVSGEIVMDNNTIKLPESAVEMPLSAITEAFEDLVKWVNNGSEDIRLDKFCEVASLVSVLFRSLGLAFKFAEMEYVAKLHGLVEASKTCHTLPDILDRDVANDTVRTSGSFSRNLRRVRQGLDLVRAIFEQLLTTDDSSLREVATTAYGQVCAPFHTWAVRTAVYAGMYTLPTRDQLLAKLNETEQSAEKKMRRYINASLPVIEYIDRLYLSRNIALDW* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0252 220 Coils Coil 175 199 - -
Lja5g0252 220 Gene3D Glycolipid transfer protein 16 220 IPR036497 -
Lja5g0252 220 PANTHER ACD11 HOMOLOG PROTEIN 19 220 - -
Lja5g0252 220 SUPERFAMILY Glycolipid transfer protein, GLTP 42 219 IPR036497 -
Lja5g0252 220 PANTHER GLYCOLIPID TRANSFER PROTEIN-RELATED 19 220 - -
Lja5g0252 220 Pfam Glycolipid transfer protein (GLTP) 46 184 IPR014830 GO:0005737|GO:0120009|GO:0120013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0252 Lja-Chr5 2201762 2204602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0252 18 220 Acyl Lipid Metabolism Gene Families AT4G39670 67.464 2.00e-99 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0252 - - aprc:113872428 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0252 5 2201762 2204602 Lja5g0252 5 2201762 2204602 ECH