Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3992 ATGGCTTCTCTGTGGTTTCTCAAATTAGCTCTCAATTGCATTGACCATTTCGCATGGCCACTTCTTGCTTTGGGGTATCCTATGTGTGCTTCCGTACAAGCAATTGAGACTGACTCCAATAAGGAAATGAGAGATTTGATCTCATATTGGATACTTCTCTCATTGTTATACCTATTTGAGTATGCTTTTATGAAACTTCTCCAATGGTTCGAGTTCTGGCCTTACATGAAGCTTATGATCATCTTCTGGCTCATCATTCCAGACTTCGGACGAGCTTCGTATGTCTATAGTAACCTTATTCGCGCATACATCTTCACAAAACCACAAACAGCCATATGCAGGTTAAATAAATGGAGGAAGTTTTTTGTCAAGAAAGAAAACTTTTCACTGCTAGCAGAGAAATATGTGAAAAAGAATGGAACTGAAGCATTTGAGAAACTCATAACTAGCAAGGACACAATAGATAATCCTGATGTAGAAGCAACGAATGCAATTAGAGCTACTTGTAAAGAAATGAAACAGACAAATGGAAAAATGCTCCAAACAGAGCACAAAGACATCAAAGATTTGGAGGTCATCGAGAAAAAAGAAATTCCGGCAGGCAAGCAAGATATTCCTTCCACACCTAACCTTGCTCCAAGTCAGAATGCTTCATCAACCATGGTGGAATCTAAAGGAATAGCAGTGAAAGTTAAAGCTGGTGAAGAGTTTCCTCAGAGTTCTATACATAAGGAAGTGCAGAAAGAGTGGACTTGCGCTTTATGTCAGGTATCAGCTTCGAGCGAGAAAAACTTGAATTTCCACCTACATGGGAAGAAACACAGGGCTGCTCATGAAGCTCTAAAAGCAAAAACTCAACCTGTTCCTCAGAAGCTGAAAATTGATCTTCCCAAAGAGGAACAGAAACAGAAGAACATCATTACCAAACCTGTTGCTCAGAAGCTGAAAATTGATCTGCCCAAAGAGGAACGGAAACAGAAGAACATCATTACCAATCAGCTAAGTAACAAGACCAATAAGGGAGAGAGTATTGTTAACATTAGTTTGAAGGGAAATGCAGTCATGGATCATAATAAGGGGCAAGAAATGCAAAAGATCCTGTCTGAATATGTTAGAGTGAAGTATTCCAATTTAAGGTGTGAATTTTGTAATGTCCGTTGCACTAGTGAGGGTGACATGGCCTCTCACTTAAATGGGAGGAAGCACTTGGCAAATATTATGGGGGTAGATGAGTTTAGAGGTAGTTGA 1248 0.3958 MASLWFLKLALNCIDHFAWPLLALGYPMCASVQAIETDSNKEMRDLISYWILLSLLYLFEYAFMKLLQWFEFWPYMKLMIIFWLIIPDFGRASYVYSNLIRAYIFTKPQTAICRLNKWRKFFVKKENFSLLAEKYVKKNGTEAFEKLITSKDTIDNPDVEATNAIRATCKEMKQTNGKMLQTEHKDIKDLEVIEKKEIPAGKQDIPSTPNLAPSQNASSTMVESKGIAVKVKAGEEFPQSSIHKEVQKEWTCALCQVSASSEKNLNFHLHGKKHRAAHEALKAKTQPVPQKLKIDLPKEEQKQKNIITKPVAQKLKIDLPKEERKQKNIITNQLSNKTNKGESIVNISLKGNAVMDHNKGQEMQKILSEYVRVKYSNLRCEFCNVRCTSEGDMASHLNGRKHLANIMGVDEFRGS* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3992 415 Pfam TB2/DP1, HVA22 family 27 103 IPR004345 -
Lja4g3992 415 SUPERFAMILY beta-beta-alpha zinc fingers 367 406 IPR036236 -
Lja4g3992 415 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 293 - -
Lja4g3992 415 Gene3D Classic Zinc Finger 346 407 - -
Lja4g3992 415 Gene3D Classic Zinc Finger 229 279 - -
Lja4g3992 415 PANTHER HVA22-LIKE PROTEINS 1 293 IPR004345 -
Lja4g3992 415 SUPERFAMILY beta-beta-alpha zinc fingers 236 285 IPR036236 -
Lja4g3992 415 PANTHER HVA22-LIKE PROTEINS 302 405 IPR004345 -
Lja4g3992 415 SMART ZnF_U1_5 375 409 IPR003604 GO:0003676|GO:0008270
Lja4g3992 415 SMART ZnF_U1_5 247 281 IPR003604 GO:0003676|GO:0008270
Lja4g3992 415 Pfam Zinc-finger of C2H2 type 379 402 - -
Lja4g3992 415 Pfam Zinc-finger of C2H2 type 250 274 - -
Lja4g3992 415 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 302 405 - -
Lja4g3992 415 SMART c2h2final6 378 402 IPR013087 -
Lja4g3992 415 SMART c2h2final6 250 274 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3992 Lja-Chr4 73030221 73033615 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3992 - - lja:Lj4g3v0387230.3 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3992 4 73030221 73033615 Lja4g3992 4 73030221 73033615 ECH