Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3960 ATGGATTATTCATATATTCTGGGAGGGATACTGGCTAGTAGTTTGGCCTTTGTGTTTGTTCTGTACAGTTTTACAGAGAAGAGGAAGGCCACAAGTTCAAGTTCATTACATTTAAAGAGTAATGGCAGTGCAAAGACATCAGAAAATGGAATATGCCCACAAAATGGTGAAGGAAGTACTGACATCATCATTGTTGGTGCTGGAGTTGCTGGTGCAGCCCTTGCTTACACACTTGGAAAGGATGGTCGGCGAGTGCATGTGATTGAAAGGGACTTGAATGAACCTGACAGGATTGTTGGTGAAGTACTAATACCTGGGGGCTATCTCAAGTTAATTGAGTTGGGTCTGGAGGATTGTTTGGATGAAATTGATGCTCAGCAAATCTTTGGATATGTCTTTTATAAGGATGGGAAAGTTACCTCGTTATCTTATCCTTTGGAAAAATTTGATTCTGATGTTTGTGGGAAAAGCTTTCACAATGGCCGTTTCGTACAGAGAATGAGAAAAAAGGCTTCATCTCTACCAAATGTGAAATTAGAACAAGGAACTGTTACATCTCTAGTTGAAGAAAATGGAACCATAAAAGGGGTGCACTACAAAACCAAGTGTGGACAAGAACTCATAGCAAAGGCTCCCCTCACCATAGTGTGTGATGGTTGTTTTTCCAACTTGAGGCGCTCTATTTGCACCCCTAAGGTTGAAGTGTCCTCTCATTTTGTTGCACTAGTCTTGGAGAACTGTAATCTTCCATATGCAAATCATGGACACGTTATCTTTGGTGATCCTTCAACAATTTTAATTTATCCCATTAGTAGCACTGAGGTTCGCTGTTTTGTTGAATTTCATGGCCAAAAGTTACCTTCCATTGGTAATGGTAAAATGGCCCTTTATATGAAAACTGTGGTAGCTTCCCAGGTTCCTCCTGAGCTGCATACTTTTTTTGTAGCAGCAGTTGATAAAGGAAACATGAGAACCATGCCAACTAAATGCATGCCTGCCTCACCTCATCCCACGCCCGGTGCCCTTCTCATCGGAGACGCACTCAATATGCGTCACTCATTAACCGGAAGTGGAATGACTGTGGCTTTGGCTGATATTGTTCTCTTAAGGAATCTACTTAGACCTCTGCATGATCTGCACAATGCTTCTGCTATTTGCAAATATCTTGAATCATTCTACACTCTCCGCAAGCCTATGGCATCTACGATAAACACAATAGCTACAGCATTTCCCAAAGTGTTTGGTGTATCTCCTGACCCTGCTATGAAGGAATTGCAACAATCATTTCTTGATTATTTGAGCCTTGGAAGAGTTTTCACAGAGGGACTAGCATCTCTCCTCGCTGGTCTAAATCCTCGTCCATTGAGCATGGTTCTCCATTTCTTCGCGGTGGCTATGTATGGCGTTGGCCGACTTCTGATACCATTTCCTTCTCCGAAACGGATATGGATTGGAGCAAGGATGATTTCAGGTGCATCAGGTGTCCTTTTCACCACTATCAAGGCTGAAGGAGTAAGACAAATGTTCTTCCCAGCAATGGTGCCAGCATATTATAGAGTCCCTCCTGTCTATTAA 1575 0.4241 MDYSYILGGILASSLAFVFVLYSFTEKRKATSSSSLHLKSNGSAKTSENGICPQNGEGSTDIIIVGAGVAGAALAYTLGKDGRRVHVIERDLNEPDRIVGEVLIPGGYLKLIELGLEDCLDEIDAQQIFGYVFYKDGKVTSLSYPLEKFDSDVCGKSFHNGRFVQRMRKKASSLPNVKLEQGTVTSLVEENGTIKGVHYKTKCGQELIAKAPLTIVCDGCFSNLRRSICTPKVEVSSHFVALVLENCNLPYANHGHVIFGDPSTILIYPISSTEVRCFVEFHGQKLPSIGNGKMALYMKTVVASQVPPELHTFFVAAVDKGNMRTMPTKCMPASPHPTPGALLIGDALNMRHSLTGSGMTVALADIVLLRNLLRPLHDLHNASAICKYLESFYTLRKPMASTINTIATAFPKVFGVSPDPAMKELQQSFLDYLSLGRVFTEGLASLLAGLNPRPLSMVLHFFAVAMYGVGRLLIPFPSPKRIWIGARMISGASGVLFTTIKAEGVRQMFFPAMVPAYYRVPPVY* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3960 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Lja4g3960 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Lja4g3960 524 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Lja4g3960 524 SUPERFAMILY FAD/NAD(P)-binding domain 60 429 IPR036188 -
Lja4g3960 524 Gene3D - 53 448 IPR036188 -
Lja4g3960 524 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 523 - -
Lja4g3960 524 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Lja4g3960 524 PANTHER SQUALENE MONOOXYGENASE 1 523 IPR040125 GO:0004506|GO:0016126
Lja4g3960 524 Pfam Squalene epoxidase 210 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3960 Lja-Chr4 72606312 72612065 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3960 37 522 Miscellaneous Gene Families AT1G58440 69.136 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3960 K00511 - gmx:100800329 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3960 4 72606312 72612065 Lja4g3960 4 72606312 72612065 ECH