Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3954 ATGTCCATAACCCAAAACCTCACCACTTCAATCTCTTCTTCTTCCTCTGCATTTTTAGCTCCCCCTACCTTCAATCCTAGGAGTCAGGTGTCATTGCCTGTGAATGTGAAGAGCGTGAACATTTGTAAATGCGTTGCAACACCCCAAGAAGCTGAGACTGCCTACAAGACTAAGGTCTCTCGCAATGCTAATATGGGTAAACTTCAAGCTGGATACCTCTTTCCTGAGGTTGCTAGAAGAAGGAATGTGCACTTGCTGAAGTACCCTGATGCAAAAGTAATAAGCCTTGGAATTGGTGATACCACTGAACCCATTCCTGAAGTCATAACTTCTGCAATGGCAAAGAGATCACAAGCATTGTCAACCTTAGAAGGATATAGTGGTTATGGAGCCGAACAAGGTGAAAAGCCATTAAGAAGTGCAATTGCTTCGACATTTTACGGTGATCTTGGTATAGAAGAAGATGATATATTTGTCTCAGATGGAGCAAAGTGTGATATATCTCGCCTCCAGATTGTCTTTGGGTCAGATGTGAAAATGGCTGTTCAAGACCCATCATACCCGGCCTATGTAGACTCAAGTGTGATTATGGGCCAGACTGGCTCCTTCCAGAAGGACGTTGAGAAGTTTGCGAACATCGAATACATGAGGTGTAATCCAGAAAATGGCTTCTTCCCTGATTTGTCTTCCATTTCTCGACCAGATATAATTTTTTTCTGTTCGCCAAACAATCCTACTGGTGCTGCTGCAACAAGGGAGCAACTGACCCAACTAGTTCAGTATGCTAAGGACAATGGGTCTATAATAATCTATGATTCAGCATATGCAATGTATATTTCTGGTGACAACCCGCACTCCATCTTTGAAATTCCCGGAGCCAAAGAGGTTGCTATTGAGACTTCATCATATAGCAAGTATGCTGGGTTTACTGGAGTCAGACTGGGTTGGACTGTGGTTCCAAAACAGTTGCTGTTTTCAGATGGATTTCCTGTTGCTAAGGACTTCAACCGTATTGTTTGCACTTGTTTCAATGGCGCGTCAAATATTTCCCAGGCAGGTGGTCTGGCTTGTCTTTCACCAGAAGGCCTTAAGGCTATGCGAGATGTTATTGGATTCTACAAAGAAAACACTAGCATTATAGTGGACACATTTGACTCTCTCGGGTTTAAGGTCTACGGAGGGAAATCTGCGCCCTATGTGTGGGTTCATTTCCCAGGGCAAAGTTCATGGGATGTGTTCAGTGAGATTCTTGAGAAGACTCATGTGGTTACAACTCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGATTTATCAGGGTTAGCGCCTTCGGTCACAGGGAAAATATCTTGGAGGCATGCAGAAGATTCAAGCAACTATACAAGTGA 1386 0.438 MSITQNLTTSISSSSSAFLAPPTFNPRSQVSLPVNVKSVNICKCVATPQEAETAYKTKVSRNANMGKLQAGYLFPEVARRRNVHLLKYPDAKVISLGIGDTTEPIPEVITSAMAKRSQALSTLEGYSGYGAEQGEKPLRSAIASTFYGDLGIEEDDIFVSDGAKCDISRLQIVFGSDVKMAVQDPSYPAYVDSSVIMGQTGSFQKDVEKFANIEYMRCNPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTQLVQYAKDNGSIIIYDSAYAMYISGDNPHSIFEIPGAKEVAIETSSYSKYAGFTGVRLGWTVVPKQLLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGLKAMRDVIGFYKENTSIIVDTFDSLGFKVYGGKSAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRENILEACRRFKQLYK* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3954 461 PANTHER AMINOTRANSFERASE 8 461 IPR019942 GO:0008483
Lja4g3954 461 Gene3D Aspartate Aminotransferase, domain 1 73 457 IPR015422 GO:0003824
Lja4g3954 461 Gene3D - 103 360 IPR015421 GO:0003824
Lja4g3954 461 Hamap LL-diaminopimelate aminotransferase [dapL]. 60 459 IPR019942 GO:0008483
Lja4g3954 461 SUPERFAMILY PLP-dependent transferases 73 456 IPR015424 -
Lja4g3954 461 Pfam Aminotransferase class I and II 92 456 IPR004839 GO:0009058|GO:0030170
Lja4g3954 461 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 8 461 - -
Lja4g3954 461 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 60 458 IPR019942 GO:0008483
Lja4g3954 461 CDD AAT_like 94 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3954 Lja-Chr4 72545961 72558432 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3954 K10206 - gmx:100801405 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3954 4 72545961 72558432 Lja4g3954 4 72545961 72558432 ECH