Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3252 ATGGCTACCAAGTGGTTCTCTAATAAAACTCTCAAGCTTAGTTTCCAGCGCCGAAGATCAAGGTCCTCCTCGAACTCATCGCTGAGCTCTCCAAGATCTCCCATGTCATCGTGCACCACCACCCTGAGCAACACGGTCGCCAATGGAGGCGACGGTGGACTCAGGGAGGTTTTCCGTCACTTTGACGGAGACGGTGACGGGAAAATCTCAGCCTATGAGCTGAGGACATATTTCGGATCCGTTGGAGAGCACATGACTCATGAGGATGCTGAACGGGTGATACGTGACCTTGACACTGATGGGGACAACTTGTTGGACTTCAATGATTTCACCAAGATGATGAGAGGGGTTGTTGGTTGCGGTGATGTTGATGAGGATCTTAGAAAAGCTTTTGATATGTTTGTGTGGGAGAAAGAAGGGTCTGGCTCTGGCTCTGGCTCTGGCGGTTGTATCACGCCAAAAGGGTTGCAGAGGATGTTGCACCGCCTTGGGGATAACAAGTCCTATGATGAGTGTGTGGCCATGATTGGTGCCTTTGACATTGATCACAATGGAGTTCTTGATTTCAACGAGTTTCACCAAATGATGGCCATGGCCTAA 600 0.4967 MATKWFSNKTLKLSFQRRRSRSSSNSSLSSPRSPMSSCTTTLSNTVANGGDGGLREVFRHFDGDGDGKISAYELRTYFGSVGEHMTHEDAERVIRDLDTDGDNLLDFNDFTKMMRGVVGCGDVDEDLRKAFDMFVWEKEGSGSGSGSGGCITPKGLQRMLHRLGDNKSYDECVAMIGAFDIDHNGVLDFNEFHQMMAMA* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3252 199 CDD EFh 54 115 IPR002048 GO:0005509
Lja4g3252 199 Pfam EF-hand domain pair 148 198 IPR002048 GO:0005509
Lja4g3252 199 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Lja4g3252 199 PANTHER CALCIUM BINDING PROTEIN 10 197 - -
Lja4g3252 199 Pfam EF-hand domain pair 54 115 IPR002048 GO:0005509
Lja4g3252 199 ProSitePatterns EF-hand calcium-binding domain. 62 74 IPR018247 -
Lja4g3252 199 Gene3D - 39 119 - -
Lja4g3252 199 ProSiteProfiles EF-hand calcium-binding domain profile. 167 199 IPR002048 GO:0005509
Lja4g3252 199 SUPERFAMILY EF-hand 51 197 IPR011992 -
Lja4g3252 199 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 10 197 - -
Lja4g3252 199 ProSitePatterns EF-hand calcium-binding domain. 180 192 IPR018247 -
Lja4g3252 199 Gene3D - 120 199 - -
Lja4g3252 199 MobiDBLite consensus disorder prediction 16 39 - -
Lja4g3252 199 SMART efh_1 171 199 IPR002048 GO:0005509
Lja4g3252 199 SMART efh_1 89 117 IPR002048 GO:0005509
Lja4g3252 199 SMART efh_1 53 81 IPR002048 GO:0005509
Lja4g3252 199 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Lja4g3252 199 ProSitePatterns EF-hand calcium-binding domain. 98 110 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3252 Lja-Chr4 61265787 61266752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3252 4 198 EF-hand Containing Proteins AT3G50770 52.217 2.45e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3252 K13448 - gmx:100500092 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3252 4 61265787 61266752 Lja4g3252 4 61265787 61266752 ECH