Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3230 ATGGACAACGATCCTCTCTTGCGCAACCAGAACGCCGCCGTGCAGGCCCGTGCCAAGGCTCAGAACCGCGCCAACGTCCTCCAGCTCAAGCTGATTGGACAGAGTCATCCTACTGGTCTCACTGCGAATCTGTTGAAGCTCTTTGAGCCGAGGCCTCCATTGGAGTATAAGCCTCCTCCGGAGAAACGAAAATGTCCTCCCCTATCAGGGATGGCGCAATTCGTGGGTAAATTTGCTGAGCCCGGTGATGCTGAATATTCGCCTCCTATACCAGTGGCTGAAACTCCTGCACAGAGGAGAGAAAGAGTCCACAAGTTAAGACTTGAGAAGGGAGCAGCAAAGGCTGCCGAGGAGCTTGAGAAATATGATCCACAAAATGACCCGAATGTATCAGGAGATCCATACAAGACATTGTTTGTGGCCAAACTTAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGGTTGGTTACTGATAGTGAGTCAAATAAGCCCAGAGGTTACGCATTCATTGAATACCTGCACACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGGAGGAAAATTGATGGTAGAAGGGTGCTCGTGGATGTTGAACGCGGGAGGACTGTTCCAAATTGGCGACCTCGTCGTCTTGGTGGTGGGCTTGGTACAACTAGAGTGGGGGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAGCAGCAATCTGCACCTTCTCGTTCTGAAGAACCCAGAGTGCGGGAGGATCGAAATGTCGATCGGGACAGAGAAAAGTCACATGAAAGAGTTAAGGACAAAGATGGAGAACGTGAGCGATCACGTGAACGGTCCAGTGATAGAGCCAGGGATCGTGATCACAGAGAGGATAGGCACCACAGAGACCGGGATAGGACTAGGGACAGAGATAGGGACAGAGAAAGAGAGAGAGACCGTGGACGTGACCGAGATAGAGGACGTGACCGCGATCGTGGTCGAGAGCGGGAACGTGATCGTGATAGAGGAAGGGATCGTGATCGGGACCGAGAACATGATCGTCATCGTGAAAGGGATAGGGATTATGAAGCTGGGGAAACTGATAGGGGACGCTCACATGATAGGGAGGTTGATTATGATCATGTTGAACCTAAACAAGAGAAGGATCGCCGTGGTGAAAGAGAGCGTGACTTTGAACCTGAGGATGATCGTGAGTACTACAACCAACCGGTGCATGGACGTAGGCATGCAGATCCTGACCATGATCCTGATCACTATGGACACTATGGGCATCACCGTGGTCGGGGGCAGTATGATGATGGAGATGAGCACGGTGACCATTACAATCAATATCATGATCAGGATAGGATGGAAGATGACTATGGCACTGAACGAGCAAAATCTGAATCACGTGAAAAGGAGAGAAGTCGTGATGTGGACCGTGAAAATCGTCGCCCAGAGAGGTCCCATTCCCGGGAATTCGATTACTGA 1509 0.5023 MDNDPLLRNQNAAVQARAKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLSGMAQFVGKFAEPGDAEYSPPIPVAETPAQRRERVHKLRLEKGAAKAAEELEKYDPQNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVTDSESNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSAPSRSEEPRVREDRNVDRDREKSHERVKDKDGERERSRERSSDRARDRDHREDRHHRDRDRTRDRDRDRERERDRGRDRDRGRDRDRGRERERDRDRGRDRDRDREHDRHRERDRDYEAGETDRGRSHDREVDYDHVEPKQEKDRRGERERDFEPEDDREYYNQPVHGRRHADPDHDPDHYGHYGHHRGRGQYDDGDEHGDHYNQYHDQDRMEDDYGTERAKSESREKERSRDVDRENRRPERSHSREFDY* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3230 502 MobiDBLite consensus disorder prediction 80 101 - -
Lja4g3230 502 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 6 352 - -
Lja4g3230 502 SMART rrm1_1 137 210 IPR000504 GO:0003723
Lja4g3230 502 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 207 IPR000504 GO:0003723
Lja4g3230 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Lja4g3230 502 MobiDBLite consensus disorder prediction 218 502 - -
Lja4g3230 502 MobiDBLite consensus disorder prediction 256 502 - -
Lja4g3230 502 CDD RRM_snRNP70 135 225 IPR034143 GO:0030619
Lja4g3230 502 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 39 127 IPR022023 -
Lja4g3230 502 PANTHER - 6 352 - -
Lja4g3230 502 SUPERFAMILY RNA-binding domain, RBD 124 236 IPR035979 GO:0003676
Lja4g3230 502 Gene3D - 123 248 IPR012677 -
Lja4g3230 502 MobiDBLite consensus disorder prediction 50 69 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3230 K11093 - gmx:100800903 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3230 4 60955811 60961338 Lja4g3230 4 60955811 60961338 ECH