LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g3226	ATGTGGCGGTGCGTGGCTCGTGCTGTTCGCGGATCATCTTCCTCAGAGAGATCCAATCTTTCTCATCAACCACTTCGATCTCATTTTTCAAGATTCTTCACCAGTGGTTCTTACAATGTGGTGGATCATAAATACGACGCGATTGTTGTTGGTGCTGGTGGCGCAGGGTTGAGAGCCGCTATTGGACTCTCTGAACATGGCTTCAACACTGCGTGCATCACCAAGCTCTTCCCGACTCGTTCACACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTATCAAGGGAAGTGATTGGCTAGGAGACCAAGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCAGTGATTGAGCTTGAAAATTATGGACTGCCATTTTCACGAACCGAGGATGGAAAGATATACCAGCGTGCATTTGGTGGTCAGAGCTTGAACTTTGGAAAAGGTGGTCAAGCATATCGTTGCGCATGTGCTGCTGATCGTACTGGGCATGCTTTATTGCACACTCTCTATGGCCAGGCTATGAAGCATAATACCCAGTTTTTTGTAGAATATTTTGCATTAGATCTTTTGATGAACAGTGAAGGTAGTTGCCAAGGAGTAATTGCCTTGAATATGGAAGATGGAACATTACATCGATTCCAAGCATCTTCAACCATTTTGGCCACTGGGGGTTATGGTAGAGCATACTTTTCTGCAACCTCAGCACATACATGCACTGGTGATGGCAATGCCATGGTTGCTCGTGCTGGGATCCCACTTGAGGATCAAGAGTTTGTGCAATTTCACCCAACAGGCATATATGGAGCTGGTTGCCTTGTCTCAGAAGGGTGTCGCGGTGAAGGTGGAATTCTTAGGAATAGTGAGGGTGAGAGGTTTATGGAAAGATATGCTCCTACTGCGAAGGATCTTGCATCACGAGATGTAGTTTCTAGATCAATGACTATGGAGATTCGGGAAGGTCGTGGTGTAGGAAAACATAAAGATCACATCTATCTTCACTTGAATCACTTACCTCCAGATGTTCTGAAGGAGAGACTACCTGGTATATCCGAAACTGCAGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTCTTGCCAACAGTGCATTATAACATGGGTGGTATTCCCACAAACTATCATGGAGAGGTGGTTACCATTAAAGGTGATGATCCAGATGCAGTAGTTCCTGGATTAATGGCTGCTGGGGAAGCAGCCTGTGCGTCAGTGCATGGTTCCAATAGGCTTGGTGCAAATTCACTTCTGGACATTGTAGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAGTTCATAAGCCAGGGGAGAAACAACAGCCTTTGGAGAAAGATGCTGGTATGAAAACGATTGCTTGGCTTGACAAATTTAGAAATTCGAATGGGTCTTTGCTACCTTCAGAAGTTCGGTTGAATATGCAACGTGTAATGCAAAACAATGCTTCTGTTTTCCGCACAGAAGAAACATTAAAAGAAGGTTGCAAATTAATTGATAAAACATGGGAGAGCTTTCATGATATCAAATTGAAGGATCGGGGTTTGATATGGAACACTGACTTGATTGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCCTGCATCACCATGCACTCTGCTGAAGCCAGGAAAGAGAGTAGAGGTGCTCATTTCCATGAGGACTTCCCGAAAAGAGATGATGAGAACTGGATGAAACACACTGTGGGATACTGGGAAAATGAGAAGGTGCGGTTAGACTACAGGCCGGTGCACATGAATACTTTGGATGATGAGGCTGAACCAGTCCCTCCTTTTGCTCGTGTTTATTAA	1890	0.4444	MWRCVARAVRGSSSSERSNLSHQPLRSHFSRFFTSGSYNVVDHKYDAIVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTIKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSEGSCQGVIALNMEDGTLHRFQASSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDQEFVQFHPTGIYGAGCLVSEGCRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGKHKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGSNRLGANSLLDIVVFGRACANRVAEVHKPGEKQQPLEKDAGMKTIAWLDKFRNSNGSLLPSEVRLNMQRVMQNNASVFRTEETLKEGCKLIDKTWESFHDIKLKDRGLIWNTDLIETIELENLLINACITMHSAEARKESRGAHFHEDFPKRDDENWMKHTVGYWENEKVRLDYRPVHMNTLDDEAEPVPPFARVY*	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g3226	629	Gene3D	succinate dehydrogenase protein domain	581	629	-	-
	Lja4g3226	629	PANTHER	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL	3	629	-	-
	Lja4g3226	629	Pfam	Fumarate reductase flavoprotein C-term	498	629	IPR015939	GO:0016491
	Lja4g3226	629	Pfam	FAD binding domain	46	442	IPR003953	-
	Lja4g3226	629	Gene3D	-	46	453	IPR036188	-
	Lja4g3226	629	ProSitePatterns	Fumarate reductase / succinate dehydrogenase FAD-binding site.	80	89	IPR003952	GO:0016491
	Lja4g3226	629	PANTHER	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	3	629	IPR030664	-
	Lja4g3226	629	Gene3D	-	469	580	-	-
	Lja4g3226	629	TIGRFAM	sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit	46	627	IPR014006	GO:0016627\|GO:0022900\|GO:0050660
	Lja4g3226	629	PIRSF	SDHA_APRA_LASPO	36	619	-	-
	Lja4g3226	629	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain	488	629	IPR037099	GO:0016491
	Lja4g3226	629	SUPERFAMILY	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	275	392	IPR027477	-
	Lja4g3226	629	Gene3D	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	284	387	IPR027477	-
	Lja4g3226	629	TIGRFAM	sdhA_forward: succinate dehydrogenase, flavoprotein subunit	43	629	IPR011281	GO:0006099\|GO:0016627\|GO:0050660
	Lja4g3226	629	SUPERFAMILY	FAD/NAD(P)-binding domain	39	465	IPR036188	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g3226	Lja-Chr4	60892787	60900076	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g3226	K00234		-	gmx:100802169	1149.81

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g3226	4	60892787	60900076	Lja4g3226	4	60892787	60900076	ECH