LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g3207	ATGACACGGATAAACAAAAGAAGAAGAGTGAAGCAGCAACAGCAAGTAGCAGCAGAAGCATTGGCAATGGAGACACTGGCTATGCGCGCGGCATCAGCTGCATCTGCAACCGTTCCCCAACCTCAATTCTCATTCCAACTTCAACACTCTCTCTTCCCCGTTCATGGCTTCACACTCTTCCACCGAAACCGCACCGATTCGCCTTCACATCTTTGTTGCAGAACCAGGCACCGCCATTCCCAACCATTCGCCAACAAACAACACCACCTCGTGCTCCATGAAGAACCACAACAACAAGAAGAGGAAGAAGATGAAGAAGTAGAAGTTGAAGAAGAAGAAGCTTCGTATTCGGATGATGACACTTCCTTCTTGTCCCTCACCGTTAAGCCTGACCGGAACATGGCCTTGCTCGACGATTACGAGACGGAGGAGCTCGATTTCGACGATGGCCCTAACCACAGAAGCGGATATGTGGCTTTACTTGGCAAGCCAAATGTTGGCAAGAGTACACTAGCAAACCAAATGGTTGGTCAAAAGTTGTCGATAGTTACCGATAAACCGCAAACGACAAGGCATCGAATTCTCTGTATATGTTCTGGAACGGATTATCAGATGGTACTTTATGACACGCCTGGCGTTCTACAGAAGGAAATGCACAAGTTAGACTCAATGATGATGAAAAATGTTCGCAGTGCGGCGGTTAATGCGGACTGTGTATTGGTTCTTGTTGATGCATGTAAAGCACCTGAAAAAATTGATGAATTGTTGGAAGAAGGCATAGGAGATCTCAAAGATAAACCTCCCGTTCTACTGATTCTGAACAAGAAGGATCTTATAAAACCTGGAGAAGTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACCAACGTTGATGAGGTTATACCAGTTAGTGCTAAATATGGTCATGGGGTTGCAGATGTCAAGGACTGGATACTGTCAAAGCTTCCTAATGGACCATCTTATTATCCAAAAGACATTGTCAGTGAGCATCCAGAAAGATTTTTTGTTGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCCTACGCATGCCAGGTGAATGTTGTAAGCTATAAGGCTCGACCGAATGCGAAAGATTTCATACAAGTCGAGATTTTGGTTGAGAAAAACTCACAAAAGATGATCGTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCTACAGCTTCCCGCCTTGACATAGAAGATTTTCTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGAAAATTGGCGACAAGACGAAGGCCTCCTTAAGGACTATGGTTATGGGGGTCAGATACGTGTTTTATGA	1362	0.4339	MTRINKRRRVKQQQQVAAEALAMETLAMRAASAASATVPQPQFSFQLQHSLFPVHGFTLFHRNRTDSPSHLCCRTRHRHSQPFANKQHHLVLHEEPQQQEEEEDEEVEVEEEEASYSDDDTSFLSLTVKPDRNMALLDDYETEELDFDDGPNHRSGYVALLGKPNVGKSTLANQMVGQKLSIVTDKPQTTRHRILCICSGTDYQMVLYDTPGVLQKEMHKLDSMMMKNVRSAAVNADCVLVLVDACKAPEKIDELLEEGIGDLKDKPPVLLILNKKDLIKPGEVAKKLEWYEKFTNVDEVIPVSAKYGHGVADVKDWILSKLPNGPSYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVSYKARPNAKDFIQVEILVEKNSQKMIVIGREGKALKLLATASRLDIEDFLQKKVYLEIEVKVRENWRQDEGLLKDYGYGGQIRVL*	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g3207	453	CDD	Era	153	322	IPR030388	GO:0005525
	Lja4g3207	453	ProSiteProfiles	Era-type guanine nucleotide-binding (G) domain profile.	154	324	IPR030388	GO:0005525
	Lja4g3207	453	MobiDBLite	consensus disorder prediction	94	119	-	-
	Lja4g3207	453	Gene3D	-	336	450	IPR015946	-
	Lja4g3207	453	TIGRFAM	small_GTP: small GTP-binding protein domain	158	316	IPR005225	GO:0005525
	Lja4g3207	453	PANTHER	GTPASE ERA-LIKE, CHLOROPLASTIC	101	447	-	-
	Lja4g3207	453	PANTHER	GTPASE ERA	101	447	IPR005662	GO:0003723\|GO:0005525
	Lja4g3207	453	Hamap	GTPase Era [era].	153	446	IPR005662	GO:0003723\|GO:0005525
	Lja4g3207	453	TIGRFAM	era: GTP-binding protein Era	156	429	IPR005662	GO:0003723\|GO:0005525
	Lja4g3207	453	Gene3D	-	151	335	IPR027417	-
	Lja4g3207	453	Pfam	KH domain	358	435	IPR004044	GO:0003723
	Lja4g3207	453	SUPERFAMILY	Prokaryotic type KH domain (KH-domain type II)	331	446	IPR009019	GO:0003723
	Lja4g3207	453	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	158	356	IPR027417	-
	Lja4g3207	453	ProSiteProfiles	Type-2 KH domain profile.	355	432	IPR004044	GO:0003723
	Lja4g3207	453	Pfam	50S ribosome-binding GTPase	158	275	IPR006073	GO:0005525
	Lja4g3207	453	MobiDBLite	consensus disorder prediction	97	118	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g3207	Lja-Chr4	60624216	60629883	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g3207	K03595		-	gmx:100815820	655.981

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g3207	4	60624216	60629883	Lja4g3207	4	60624216	60629883	ECH