Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3172 ATGAATCCCTCCGCCGCAGCGCCACTCTGGATCCCCGAAGATGATTTTCTCCTCAAGAACGCCGTCGAGGCTGGAGCTTCGCTCGAATCGCTGGCCAAAGGAGCGGTTCGATTCTCCCGGAGGTACTCCCTCACGCAAATTCAGGATCGGTGGCGCTCTATCCTCTATGGTCCTGAAGAATCGGCTAAGGCTGCAGCTTCCATGCTGAATTTGGAGCTTAGCAGGTTCGCCGGCGCCGGAGCCGGAGCCAAGGAAGCAGCGTCCGACGCCGGCAACGGCCGCCGGGTGAAGATGAAAATCGAGACGTTCCGCAAGAGGAAAAGGGATTCGCTCCGGAAGCAGTACTACGAGAGGATGAGGATGCGGAAGTTGATTCGCATGGAGGTTTTGGACTCTTTGGATATTGGGTTCGATGATGGAGTGAGAATCGTTGATGACGCGGTTGGCTATGAAGGAGATGAAATTGGAGGTAATTTGAATTGTGACATGAACCATTTGCATGTGGATAGTGTTGTTGGTTTTGATGAAGCAGGGGTGGGGCCATTGAATTCAATGAGTGATGCCCCTCTGTGGAAGACAATTGAGGATGTTTCTGCTCCTGTTTTGCCTAGTGGCAATGCTGTGTTGAGTGTTCCTGGTGGTGCTGCTGTGTTGGGAGAGGAGGGTGTGCGGATTTCTGATTCTCTCATGGATTTGACCAATGGGGATGATGAGGGGCTTCTGTTGGATGGGACCGCGAAGGAGAAGCTGGGTTGTGATGATAAAATTGTTTCTGAGAATGTTGATGCATCTGTTGTTGTTCCTGAATTGCTGAAGCTGGATACAGGAACAAAACTTGCTGTGCGAAGGGGGTCATCTGCTGCTGAGCTAGGGGTTGGTTTCAACTCTTCAGGTGAAAGTCATGGTGATATGGATCTGGTTTCTGATCCGGGAAATGAAGTACGACCATCATCGGCTACTGCTGCAGTACAAAGTCCTCACCCTGAAAGAAGTGAGGACCTTAGGATCTGTGTTTTGAACACTGAGGATACTGATGTCCCTGTTAATGACAGTGTAAATCTATCTGTTGTAGCTCCCCGTTCGGTGGCTATGAAATCTCAACGGGTTGCTAATGACTGTGTAAATGTATCTGATGTAGTTCCTCGTTCGGTGGTTGCTAATGACTGTGTAAATGTATCTGTTGTAGCTCCTCGTTCGGTGCCTCTGAAATCTCAATCGATTGCTAAAGAGGTGGGTTATTCAGATCCCTCTATTAGTAATCAAAGGAAAAATGTACCAGCCGGAAGCTTGGAGAAAGAAGAAATGAACAGGGCGGGTTTAGTGCCTACTATAAACTCAAGCAATACGCCTATTGGGGTTGGAATGAAAGCTGAAATTTCTACTGGAAACTCTATTTCTGCAGTTTCTAGACAGAATAATAATGTCAACATCAAGCCAAGTCAGAGCAGATTAGGGCATGCAAAACAAGAGGAAATCGATGCTTTGGCTTCTGCTGTAGTTTATGCACATCCAAAGGCAAAGGATCATATGGCTTCGAAGAAATTGGAAGAAAAATCATTGTCACACCGTCAGGAAGAAGGAGATGATGATGATAGCGATGCTGATGACAGCGATGAGGATGAAATTCCTTACTATTCTGATGCTGAGAAAATGATTCTTGAAATGGATTTATGTCCAGCTGATGAAGATATAAATGCAAGTAGAGAAGTCTTGGAGTATCAACATGAAGAAACAAAGAGGGCCATCATGAGATTGGAGCAATGTGCTCATGCCTTCACGCAAAGAGCCATTGCATCTGAAGGTGCACTTGCGGTATTGTATGGGCGCAAGATGAAGCAGTATATTAAGAAAAGTGAGGTCATACTTGGCAGAGCAACAGAAGGTGTGCAAGTTGATATTGACTTAGGAAGAGAAGGGCGTGCTAACAAAATATCTAGAAGACAAGCCTTGATAAAGATGGATGCAAATGGTTCTTTCATTATTAAGAATCTTGGCAGGAGATCTATCTTCTTGAATGGCAAAGAAGTTGCCCATGGACAGCTGCGTGGTCTCAGTCCTAGTTGTTTGATCGAGATTACTGGCCTGTCGTTCGTCTTTGAGTTCAATAGCATGTCTGTTAAGAGGTTTTTAGAAAATGTGGATCCAAAGAGAGAAAGCTGA 2160 0.4597 MNPSAAAPLWIPEDDFLLKNAVEAGASLESLAKGAVRFSRRYSLTQIQDRWRSILYGPEESAKAAASMLNLELSRFAGAGAGAKEAASDAGNGRRVKMKIETFRKRKRDSLRKQYYERMRMRKLIRMEVLDSLDIGFDDGVRIVDDAVGYEGDEIGGNLNCDMNHLHVDSVVGFDEAGVGPLNSMSDAPLWKTIEDVSAPVLPSGNAVLSVPGGAAVLGEEGVRISDSLMDLTNGDDEGLLLDGTAKEKLGCDDKIVSENVDASVVVPELLKLDTGTKLAVRRGSSAAELGVGFNSSGESHGDMDLVSDPGNEVRPSSATAAVQSPHPERSEDLRICVLNTEDTDVPVNDSVNLSVVAPRSVAMKSQRVANDCVNVSDVVPRSVVANDCVNVSVVAPRSVPLKSQSIAKEVGYSDPSISNQRKNVPAGSLEKEEMNRAGLVPTINSSNTPIGVGMKAEISTGNSISAVSRQNNNVNIKPSQSRLGHAKQEEIDALASAVVYAHPKAKDHMASKKLEEKSLSHRQEEGDDDDSDADDSDEDEIPYYSDAEKMILEMDLCPADEDINASREVLEYQHEETKRAIMRLEQCAHAFTQRAIASEGALAVLYGRKMKQYIKKSEVILGRATEGVQVDIDLGREGRANKISRRQALIKMDANGSFIIKNLGRRSIFLNGKEVAHGQLRGLSPSCLIEITGLSFVFEFNSMSVKRFLENVDPKRES* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3172 719 CDD FHA 616 703 IPR000253 GO:0005515
Lja4g3172 719 MobiDBLite consensus disorder prediction 507 541 - -
Lja4g3172 719 PANTHER FHA DOMAIN PROTEIN 1 148 - -
Lja4g3172 719 PANTHER FHA DOMAIN PROTEIN 184 718 - -
Lja4g3172 719 PANTHER MICROSPHERULE PROTEIN 1 184 718 IPR037912 GO:0002151|GO:0031011|GO:0071339
Lja4g3172 719 SMART FHA_2 619 676 IPR000253 GO:0005515
Lja4g3172 719 ProSiteProfiles Forkhead-associated (FHA) domain profile. 620 676 IPR000253 GO:0005515
Lja4g3172 719 Pfam N-terminal region of micro-spherule protein 10 72 IPR025999 -
Lja4g3172 719 MobiDBLite consensus disorder prediction 507 527 - -
Lja4g3172 719 SUPERFAMILY SMAD/FHA domain 612 703 IPR008984 GO:0005515
Lja4g3172 719 Pfam FHA domain 620 692 IPR000253 GO:0005515
Lja4g3172 719 MobiDBLite consensus disorder prediction 311 331 - -
Lja4g3172 719 PANTHER MICROSPHERULE PROTEIN 1 1 148 IPR037912 GO:0002151|GO:0031011|GO:0071339
Lja4g3172 719 Gene3D - 563 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3172 Lja-Chr4 59958638 59963977 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3172 - - lja:Lj4g3v1000030.1 1352.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3172 4 59958638 59963977 Lja4g3172 4 59958638 59963977 ECH