Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3142 ATGGAACAGAAGGTTACTGTGACCAATAAAAAGTACCTACTAGGTGCCTTGTTTTGGAAACTAGCAGTTTCAATCATTGCAGTACTCGTAATAGGTGCTGGTGTTTTCACCATACTCACCAAGTTTCGTTATTCTCATTCACCTAAACTCCATACTCGCCCCACCAACATCGTTCACAAATATGCCTCTGCTCTTGAATTGTCTCTGCTATTTTTTGATGCCCAGAAATCTGGGAAGCTGCAGAATAACAGGGTTTCATGGAGAGGGGATTCAGGGCTACGAGATGGGAGTGAAGCGAATTTGGATTTGTCTAAAGGAATGTATGATGCTGGTGACCTCATGAAGTTTGGGTTTCCCATGGCTTTCACTGCTACTGTGCTTTCTTGGGCCATTCTTGAGTATGGAGATCACATGGATGAGGTGAACCAGCTGCAGTTTGCATTGGACTCGCTCAAGTGGGTCACAGATTATCTTGTTAATGCACATCCTTTTGCTGATGTGCTCTACATTCAGGTGGGGGATCCTGAGGTGGATCACAATTGCTGGGAAAGGCCTGAAGACATGACTGAAGGAAGGCCACTTACTCAAGTTAACTCATCTTTCCCGGGAACAGAAGTTGCAGCAGAAACTGCAGCTGCATTGGCCTCAGCGTCTCTGGTTTTTAAGGACATCAATGTCACTTATTCTGATATTCTCCTTGGACATGCTCAGCAGCTGTTCACTTTTGCTGATACATACAAAGTTTCCTACAGTGTCAGCGTCCCTCAAGTGGGGCAATACTACAACTCTTCTGGGTACTGGGATGAACTCTTATGGGCAGGTAGCTGGCTCTATCATGCAACAAACGATCCAACATACCTAAATTATGTGACACAGCAGAATGAAAATGCATATGGCAATTTAGGAAGTCTATCTTGGTTTAGTTGGGATGATAAGCATGCTGCAACTCAGGTTCTATTGTCAAGAGTAAATTTCTTTGGTTCTAGAGGCATGCCTGATGCACAGAACCTTGACCTTCAGAAGTATAGAGAATCTGCTGAAATGCTCATGTGCAAGCTTCTACCAGATTCACCAACAGCCACAACCAACAGGACTGAAAGTGGGCTGATATGGGTGGTACCATGGAACCCTTTGCAACATTCAGTGGCTTCTGCATTCTTAGCAGTTCTTTATAGTGATTACATGCTGACATCTCAAACTGAAAATCTATACTGTAGTGGGAAATTGTATAAACCAGTAGATCTTCGCAAATTCGCCATTTCTCAGGCTGAGTATGTATTGGGAGAAAATCCTATGAGGATGAGTTATCTAGTGGGATATGGAAGTGATTACCCTAAACATATTCATCACAGAGGATCTTCCATTCCAGTTAATGCTACAACTGGTTGCAGGGATGGATTCAAGAAATGGTTTGACTCACCTCACCCCAATCCTAATACAGCAGTTGGAGCTCTAGTGGGTGGTCCTTTCTTCAATGAGACATACAATGATTTCAGGAACAACTCCATGCAGGGTGAACCAACCACTTACAGTAGTGCCCTACTGGTTGCTCTCCTCTCTGGCTTGGTTGCTAGTTCCTCAGTAGATAGGTCTTTCTAG 1599 0.4384 MEQKVTVTNKKYLLGALFWKLAVSIIAVLVIGAGVFTILTKFRYSHSPKLHTRPTNIVHKYASALELSLLFFDAQKSGKLQNNRVSWRGDSGLRDGSEANLDLSKGMYDAGDLMKFGFPMAFTATVLSWAILEYGDHMDEVNQLQFALDSLKWVTDYLVNAHPFADVLYIQVGDPEVDHNCWERPEDMTEGRPLTQVNSSFPGTEVAAETAAALASASLVFKDINVTYSDILLGHAQQLFTFADTYKVSYSVSVPQVGQYYNSSGYWDELLWAGSWLYHATNDPTYLNYVTQQNENAYGNLGSLSWFSWDDKHAATQVLLSRVNFFGSRGMPDAQNLDLQKYRESAEMLMCKLLPDSPTATTNRTESGLIWVVPWNPLQHSVASAFLAVLYSDYMLTSQTENLYCSGKLYKPVDLRKFAISQAEYVLGENPMRMSYLVGYGSDYPKHIHHRGSSIPVNATTGCRDGFKKWFDSPHPNPNTAVGALVGGPFFNETYNDFRNNSMQGEPTTYSSALLVALLSGLVASSSVDRSF* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3142 532 SUPERFAMILY Six-hairpin glycosidases 60 525 IPR008928 GO:0005975
Lja4g3142 532 PANTHER ENDO-1,4-BETA-GLUCANASE 20 532 - -
Lja4g3142 532 PANTHER ENDOGLUCANASE 2 20 532 - -
Lja4g3142 532 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 425 451 IPR018221 -
Lja4g3142 532 Gene3D - 56 530 IPR012341 GO:0005975
Lja4g3142 532 Pfam Glycosyl hydrolase family 9 61 519 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3142 Lja-Chr4 59458351 59462073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3142 19 513 Glycoside Hydrolase AT1G75680 60.516 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3142 - K01179 gmx:100782202 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3142 4 59458351 59462073 Lja4g3142 4 59458351 59462073 ECH