Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3118 ATGGGAGGCACATGGACTTCATCACCTGCTGAGTCTCTCTCTGTTCTTCTCTTACTCTGTTTCTATAGCTCACTAGTTTCTGCAAATTACATAAAGTACAACACTGGGGCTAGTGCTGTGCAAGGAAAATTGAATGTTCACCTGGTTCCGCATTCTCATGATGATGTTGGTTGGCTGAAGACCGTTGATCAATACTTTGTTGGATCAAACAATTCTATTCAGGGGACGTCCATTGAGAATGTGCTGGATTCGGTGGTTGCATCTCTTCAGAAAGATCCAAACAGAAAGTTTGTGTTTGCAGAGATGGCATTTTTCCATCGATGGTGGGTAGAACAAAGTCCTGAAACACAAGAGCAAGTGAAAAAGCTTGTGAATGCTGGGCAGCTAGAATTCGTAAATGGTGGTTGGTGTATGCACGATGAAGCTGCGACTCATTACATAGATATGATTGACCAAACAACATTAGGTCATCGCTTCATTAAGGACCAGTTTAACATAATCCCACGTGCTGCTTGGCAGATTGATCCTTTTGGACACTCTGCTGTCCAGGGTTACTTACTAGGAGCTGAGATTGGGTTTGATTCTGTACACTTTGCTAGGATTGATTATCAGGACAGAGCTAAACGCAAAAATGAAAAAACACTTGAAGTTATTTGGCGTGGGTCCAAAACATTTGGTTCTTCATCTCAGATTTTCACAAATACATTTCCCGTTCATTATAGTCCTCCAAACGGGTTCAATTTTGATGTCACGAATGATGAGGGTTTTGATCCCTTACAGGATGATCCTCTTCTCTTCGATTCCAATGTTGAAGAGCGAGTCAAGGACTTCATTAGTGCTGCTACTACCCAAGCAAATGTGACAAGGACAAATCATATCATGTGGACAATGGGTGATGATTTCCAGTACCAATATGCAGAGTCTTGGTTTAAGCAAATGGATAAATTTATTCACTATGTTAATAAGGATGGTAGAGTGAATGCCTTATACTCTACTCCATCTATTTATACCAATGCCAAAAATGCTGCAAATCAATCATGGCCGCTCAAAACTGACGACTACTTTCCGTATGCTGATAGACCAAATGCTTATTGGACAGGCTATTTCACTAGTCGCCCTGCCTTAAAGCGATATGTTAGGATTCTAAGCGGATACTATTTGGCAGCGCGTCAACTTGAATTTTTCGCCGGGAAGAAATCAGATGCATATCGTCCTTTTGGCATTGGAGATGCTCTAGGAATTGCACAGCACCATGATGCTGTCAGTGGCACAGCCAAACAACATACAACTGATGACTATTCCAAACGTTTGGCTATTGGAGCCTCTATGACTGAAGCAGTTGTTAGTTCTTCATTGGCTTGTCTTGCTAGTAAGCAATCAGGTGATCAATGTTCAGCACCGGCATCGGCATTTTCCCAGTGTCAATTACTTAATATCAGTTACTGCCCTCCAACAGAAGACACTATTCCAGATGCTAAGAGCTTGGTAGTAGTGGTGTATAACCCACTTGGATGGAATCGTACCGATATAGTTAGAATACCAGTTAATGATGCTAATCTTGTTATCAAAGATTCGTCGGGCAATAAACTTGAAGCACAATATGTGGATGTGGATGTGGATGATGTTACAGCAAACTTAAGAAAATTGTATGTGAAGGCCTATTTGGGGCTGTCAGTGGATAAAGCCCCGAAATACTGGCTTCTGTTTCAGGTGTCAATACCTCCACTTGGATGGAGTACATACTTCATTTCTGAAGCAGCTGGAAGAGGGAAAAGGAGAAAAGGAGATCTCTCAAAACTGAGCAGTAGAAACGGTGCGAACATTGACATAGGGCCGGGAAATTTGAAAATGTCCTTTTCTTCAACCTCTGGACAACTCAATAGGATGTATAATTCCAAAACTGGAGTTGATATTCCAATTCAACAAAGCTACCTCTGGTATAGTTCTAGCGACGGTAATGATGTGGATCCTCAGGCTTCGGGTGCATATATATTCCGGCCTAGTGGAAACTCTCCAAGTATTGTTTCAAGATCTGTGCCCTTCAAGGTAATCCGTGGACCGCTAGTTGATGAGGTTCATCAAAACTTTAGTTCTTGGATTTACCAGGTTACTAGGCTTTACAAGGACAAAGACCATGCTGAGATTGAATACACTATTGGTCCAATTCCTACTGATGATGGAGTTGGAAAAGAGGTAATCACACGGATGACAGCAAATATGGCCACAAAGAAGGAGTTTTATACTGATTCTAATGGGCGAGATTTTCTGAAGAGGGTGCGAAATTTTAGGGAAGACTGGCCCCTTCAAGTTAATCAACCTGTAGCTGGAAACTATTACCCACTTAATCTTGGAATTTACACTAAGGATGACAAATCTGAATTCTCAGTCTTAGTTGATCGTGCCACTGGTGGATCCAGCATCAGTGATGGTGAGGTGGAATTGATGCTTCATAGGCGGCTTCTCGATGACGATGGCAGAGGAGTAGCGGAACCACTTGATGAACAAGTTTGTGTGGAGAATAAATTGAATAATACATGTGAAGGACTAACAGTTAGAGGAAATTATTATGTCGGTATCCACAGTTCCGGAGCTGGTTCACGCTGGCGCCGAACAACTGGCCAGGAAATTTACTCGCCGCTCTTATTGGCTTTTACACATGAGAACTTGGAAAATTGGAAGTCGTCTCATTTGACTGAAGGAACTGTCATGGATCCAAATTACACCCTCCCTCCTAATGTTGCTCTGATAACTCTTGAGGTGTTGGATGGCGGAGTTGTTCTTCTCCGTTTGGCGCATCTATATGAGACAAATGAAGATGCTGAGTATTCAACTCTGGCCAAAGTTGAACTGAAAAAGTTGTTTGCCTCTAAAACGATAAAAGAGTTGAAGGAGGTAAGTTTATCTATTAACCAAGAGAAATCAGAAATGAAGAAGATGACATGGAAGGTTGAAGGGGACATAGGCAAAGAACCTCAAGCAGTTAGGGGTGGAGCTGTAAGAACCACCGATTTTGTTGTTGAGCTTGGTCCCATGGAAATTCGTACTTTCTTGTTGAAATTCTAA 3063 0.4195 MGGTWTSSPAESLSVLLLLCFYSSLVSANYIKYNTGASAVQGKLNVHLVPHSHDDVGWLKTVDQYFVGSNNSIQGTSIENVLDSVVASLQKDPNRKFVFAEMAFFHRWWVEQSPETQEQVKKLVNAGQLEFVNGGWCMHDEAATHYIDMIDQTTLGHRFIKDQFNIIPRAAWQIDPFGHSAVQGYLLGAEIGFDSVHFARIDYQDRAKRKNEKTLEVIWRGSKTFGSSSQIFTNTFPVHYSPPNGFNFDVTNDEGFDPLQDDPLLFDSNVEERVKDFISAATTQANVTRTNHIMWTMGDDFQYQYAESWFKQMDKFIHYVNKDGRVNALYSTPSIYTNAKNAANQSWPLKTDDYFPYADRPNAYWTGYFTSRPALKRYVRILSGYYLAARQLEFFAGKKSDAYRPFGIGDALGIAQHHDAVSGTAKQHTTDDYSKRLAIGASMTEAVVSSSLACLASKQSGDQCSAPASAFSQCQLLNISYCPPTEDTIPDAKSLVVVVYNPLGWNRTDIVRIPVNDANLVIKDSSGNKLEAQYVDVDVDDVTANLRKLYVKAYLGLSVDKAPKYWLLFQVSIPPLGWSTYFISEAAGRGKRRKGDLSKLSSRNGANIDIGPGNLKMSFSSTSGQLNRMYNSKTGVDIPIQQSYLWYSSSDGNDVDPQASGAYIFRPSGNSPSIVSRSVPFKVIRGPLVDEVHQNFSSWIYQVTRLYKDKDHAEIEYTIGPIPTDDGVGKEVITRMTANMATKKEFYTDSNGRDFLKRVRNFREDWPLQVNQPVAGNYYPLNLGIYTKDDKSEFSVLVDRATGGSSISDGEVELMLHRRLLDDDGRGVAEPLDEQVCVENKLNNTCEGLTVRGNYYVGIHSSGAGSRWRRTTGQEIYSPLLLAFTHENLENWKSSHLTEGTVMDPNYTLPPNVALITLEVLDGGVVLLRLAHLYETNEDAEYSTLAKVELKKLFASKTIKELKEVSLSINQEKSEMKKMTWKVEGDIGKEPQAVRGGAVRTTDFVVELGPMEIRTFLLKF* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3118 1020 Pfam Glycosyl hydrolases family 38 N-terminal domain 45 358 IPR000602 GO:0004559|GO:0006013
Lja4g3118 1020 SUPERFAMILY Galactose mutarotase-like 470 1020 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lja4g3118 1020 Pfam Alpha mannosidase middle domain 363 455 IPR015341 GO:0004559|GO:0006013
Lja4g3118 1020 SMART Alpha_mann_mid_2 363 437 IPR015341 GO:0004559|GO:0006013
Lja4g3118 1020 PANTHER ALPHA-MANNOSIDASE 15 1020 - -
Lja4g3118 1020 SUPERFAMILY Glycoside hydrolase/deacetylase 33 361 IPR011330 GO:0005975
Lja4g3118 1020 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 912 1017 IPR041147 -
Lja4g3118 1020 CDD GH38N_AMII_LAM_like 44 322 - -
Lja4g3118 1020 SUPERFAMILY Families 57/38 glycoside transferase middle domain 363 462 IPR028995 -
Lja4g3118 1020 Gene3D Glycoside hydrolase 38, N terminal domain 44 326 IPR027291 -
Lja4g3118 1020 Gene3D - 607 878 - -
Lja4g3118 1020 Gene3D - 902 1020 - -
Lja4g3118 1020 Gene3D Glycoside hydrolase family 38, central domain 408 461 IPR037094 GO:0004559|GO:0006013
Lja4g3118 1020 PANTHER ALPHA-MANNOSIDASE 15 1020 - -
Lja4g3118 1020 Pfam Glycosyl hydrolases family 38 C-terminal domain 611 826 IPR011682 GO:0004559|GO:0006013
Lja4g3118 1020 Gene3D Glycoside hydrolase family 38, central domain 327 407 IPR037094 GO:0004559|GO:0006013
Lja4g3118 1020 Gene3D - 473 586 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3118 Lja-Chr4 58938153 58949258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3118 16 971 Glycoside Hydrolase AT3G26720 59.521 0.0 1191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3118 K01191 - gmx:100775419 1736.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3118 4 58938153 58949258 Lja4g3118 4 58938153 58949258 ECH