Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3111 ATGTTGCAAGAAATGTGGAATGCTCCCCCTGGTTTCAGACCCAGTAAGTCTGCACCTTCTTCTCCAGCCAAGCCTCTTGGTGTTCCAAGAACTCGATCTGAATCGTTCCACATAGCCCACAAGGTCCCAGTTGGAGATACTCCTTATGTTAGAGCAAAAAATGTTCAGTTGGTTGAAAAGGATCCGGAGAGAGCAATTCCACTGTTCTGGGCAGCCATTAATGCAGGGGATAGAGTGGATAGTGCTTTGAAAGATATGGCTATTGTGATGAAGCAGCAGAATCGATCTGAAGAAGCCATTGAAGCTATTAAATCACTTCGAAGTAGATGTTCAGATCAAGCTCAAGAGTCTCTTGATAATATCCTCTTGGATCTTTACAAGAGATGTGGGAGACTTGATGATCAAATTGCTCTTTTGAGGCACAAGCTGTACTTGATTCAACAAGGGTTGGCTTTCAATGGAAAGCGCACGAAAACTGCGAGATCTCAAGGCAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTGGGAAATCTGGGATGGGCACTGATGCAGCAGAGCAACTACATGGAAGCAGAAGAAGCTTATCGGCGCGCGCTTTCGATTGCTCCAGATAACAACAAGATGTGCAATCTGGGTATCTGCTTGATGAAGCAAGGGAGAATTGTTGAGGCAAAAGAAACACTTTGTAGGGTGAAACCCGCGGTTCATGACGGCCCAAGAGGCTCAGATTCTCATCTGAAAGCCTATGAAAGGGCACAGCAAATGCTCAAGGACCTTCAGTCTGAGAGGATGAACATAGGAGGAGGGGATAGGGTTGAACAAAGAAGACTCTTTGAAGCTTTTCTGGGATCTTCATCAATCTGGCAGCCTCAGCCTTGCAAGGATCACACCTCAAATTCAGTCAAAACAACACAAGATGAATTTGCAGATGAGAACATCAATTCCAACATCATGACAAAAAATCACACACAGCAGCAGCAGAAAAGCAAACAGGCTGCAAGCACTCTGGGGAACTCTCTGAATGTCACAGCTCCACCATTTTATACATCGAAACCTTTGGTAAGAGAACCGCCAAATGAGAATCATTTCGCGGAGACGCTTAAGAGAACAAGGTCTGGAAATGCTGCAGGGTCAATGAGAGTCAATGATGTGGGGGATTTCAACAAGGTGAATATGGAATTAGGGGTGCCACTGCCAGAGAACAAAACAAGAAGGCTCTCATCAGAGGATAACAATGAGAAGAACAAGATGGTAGACTTGTTACCAGATAACAAGGACTTTGAAGATGCTATTCTTGCTGCAATTTTGGAGCCTGCAGCAGAGAAAGCAGCCAATGACAAGATTTTCCAGAAGAAAACTGATAAGAGGCTTAAGGTTTTTCAAGATATTACATTGTCTTTGAGTCCAAGGGCCTGA 1428 0.4447 MLQEMWNAPPGFRPSKSAPSSPAKPLGVPRTRSESFHIAHKVPVGDTPYVRAKNVQLVEKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRSEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQSNYMEAEEAYRRALSIAPDNNKMCNLGICLMKQGRIVEAKETLCRVKPAVHDGPRGSDSHLKAYERAQQMLKDLQSERMNIGGGDRVEQRRLFEAFLGSSSIWQPQPCKDHTSNSVKTTQDEFADENINSNIMTKNHTQQQQKSKQAASTLGNSLNVTAPPFYTSKPLVREPPNENHFAETLKRTRSGNAAGSMRVNDVGDFNKVNMELGVPLPENKTRRLSSEDNNEKNKMVDLLPDNKDFEDAILAAILEPAAEKAANDKIFQKKTDKRLKVFQDITLSLSPRA* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3111 475 Coils Coil 246 266 - -
Lja4g3111 475 Coils Coil 89 109 - -
Lja4g3111 475 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 472 IPR044961 -
Lja4g3111 475 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Lja4g3111 475 SMART tpr_5 176 209 IPR019734 GO:0005515
Lja4g3111 475 SUPERFAMILY TPR-like 59 232 IPR011990 GO:0005515
Lja4g3111 475 MobiDBLite consensus disorder prediction 1 32 - -
Lja4g3111 475 Gene3D Tetratricopeptide repeat domain 49 270 IPR011990 GO:0005515
Lja4g3111 475 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 472 - -
Lja4g3111 475 Pfam Tetratricopeptide repeat 178 209 IPR001440 GO:0005515
Lja4g3111 475 ProSiteProfiles TPR repeat region circular profile. 176 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3111 Lja-Chr4 58853334 58855362 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3111 - - adu:107476429 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3111 4 58853334 58855362 Lja4g3111 4 58853334 58855362 ECH