Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3006 ATGGAAACAGTGGGCAAAAGCCCCAGAAAACACCCACCCAAAAACCCTAACAAGAACCACCCAACCCCAATTCCCAAACGCCACAAACCCAACGAATTCCCCACCCACCTCGACACCCCCAACGTCTCCCCCGTCGCGCGAACCCTCTGCAACCTCCTCACCCGAACCTCCCCTCCGGAAATCGAAACCGCTCTCACCTCCTCCGGCATCCACCCCTCCGATGACTGCGTCCGCGAGGTCCTCAAGCTCTCCTACAACTACCCCCACTCCGCCGTCAAATTCTTCCGCTGGGCCGGCCGCCTCCAGAAGCATTCTCCCCACGCATGGAACCTCATGGTCGATCTCCTTGGCAAGAACGAGCTTTTCGACCCAATGTGGGACGCGATTCGCTCTATGAAACAAGAAGGAGTGCTCACATTGCGCACTTTCGTCTCGGCTTTCCAGAGCTACTGCGTCGCCGGAAGGTTTAACGAGGCGATCATGAGCTTTGATGTGATGGATAATCATGGCATTGAGAAGGACGTTGTTGCGGTTAATTCGTTGCTCAGCTCGATTTGCTGCGAGGAGAATCAGACCTCGACGGCTATGGAGTTTTTCGAGGAGGTGAAGGGGAAGATTGCGCCGGATGGGGATAGCTTTGCCATCTTGCTTGAAGGATGGGAGAAGGAAGGCAATGCTGCAAAGGCCAAGACCACGTTCGGTGAGATGGTGATCCGTGTGGGATGGAGCAAGGAGAATGTGATGGCCTACGACGCGTTTTTGCTGACCCTGCTTCGTGCTTCGCAGATTGAGGAGGTGCTGAGGTTCCTTAAGGTCATGAAGGATCACGACTGCTTTCCAGGTTTGAAATTCTTTACCTATGCTCTTGATGTGGACAATGCGTTTCGCCTGCTGGATGAGATGGTCTTGCACGGGGCTTTCCCGGACTCCTTAACCTATAACATGATTTTCAAATGCTTGGTGAGGAACAAGAAGGTTCGCGAGACGGAGAGCTTCTTTGCTGAGATGGTCAAGAACGAGTGGCCGCCGACAAGTTCTAACTGTGCTGCGGCTATCGCAATGTTGTTTGATTGCGATGACCCCGAAGCAGCACATGAGATTTGGAGTTACATGGTTGAAAATCATGTCAAGCCACTTCATGAAAGTGCCAATGCATTGCTTATTGGTATTTGTAGCTTGAGTAGATTTTCAGAGGTCAGAAGGCATGCTGAGGACATGCTCGATCGGAGGATCATTATATATGAATCTACAATGAACAAGTTGAAGGATGCGTTCTACACAGAGGGTAGAAGTAGAAAAGACAGATTTGATAGCCTCTTCCGGAGGTGGAAAGCTCGTGTCAAGTTCATCTTTGACAGCAGGTCAGGTGATTTTCTAAATCTGGTATCGGGTGGTGCCGGTGGCCGCACCAACCTCTTAGTGTGGTTAGCTGCCATTATTTGCACGATTTTCGCGATATCTGTTGTAGTTTGCGGCATAGTAGTGTTCATTGCTTACATGGTGATTCACCCTAGGGTACCTGTGATGAGTATCACTAGTGCTCATCTAGATCTTCTAAAAAATGATTATGCTGGTCTACTCCAAACCCAGATCAGCATTGTCGTGACCGCAAAGAATGGGAATGCAAAGGCTCATGCGTCGTTCTCCAACATAAGATTCAACCTTACCTACCAGGGCCAAGGCATAGCAATGCTGGTTGCGGACCCATTTGAGGTGCCAAAGAACAGTTCGAATGATCTTAATTATGTTGTTCAGTCCTCTTCTATACCGTTAACTCCGGACCAAATGGAGGAAGTGGATGATTCGTGGAAAAGGAATGAGATTAGTTTTGATTTCAAGGGAGCTGCAAGGACACGTTGGAGGGTAGGGCCTATTGGATCTGTTAAGTTCTTGTGTCGTCTGAGTTGTAAACTCAAGTTCCACCCTGTGAATGGGAGTTACATACCCTCGCGGTGCACCTCCAAATCAAAATGA 1974 0.4959 METVGKSPRKHPPKNPNKNHPTPIPKRHKPNEFPTHLDTPNVSPVARTLCNLLTRTSPPEIETALTSSGIHPSDDCVREVLKLSYNYPHSAVKFFRWAGRLQKHSPHAWNLMVDLLGKNELFDPMWDAIRSMKQEGVLTLRTFVSAFQSYCVAGRFNEAIMSFDVMDNHGIEKDVVAVNSLLSSICCEENQTSTAMEFFEEVKGKIAPDGDSFAILLEGWEKEGNAAKAKTTFGEMVIRVGWSKENVMAYDAFLLTLLRASQIEEVLRFLKVMKDHDCFPGLKFFTYALDVDNAFRLLDEMVLHGAFPDSLTYNMIFKCLVRNKKVRETESFFAEMVKNEWPPTSSNCAAAIAMLFDCDDPEAAHEIWSYMVENHVKPLHESANALLIGICSLSRFSEVRRHAEDMLDRRIIIYESTMNKLKDAFYTEGRSRKDRFDSLFRRWKARVKFIFDSRSGDFLNLVSGGAGGRTNLLVWLAAIICTIFAISVVVCGIVVFIAYMVIHPRVPVMSITSAHLDLLKNDYAGLLQTQISIVVTAKNGNAKAHASFSNIRFNLTYQGQGIAMLVADPFEVPKNSSNDLNYVVQSSSIPLTPDQMEEVDDSWKRNEISFDFKGAARTRWRVGPIGSVKFLCRLSCKLKFHPVNGSYIPSRCTSKSK* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3006 657 MobiDBLite consensus disorder prediction 1 40 - -
Lja4g3006 657 Gene3D Tetratricopeptide repeat domain 77 186 IPR011990 GO:0005515
Lja4g3006 657 Gene3D Tetratricopeptide repeat domain 187 286 IPR011990 GO:0005515
Lja4g3006 657 PANTHER OSJNBA0019D11.15 PROTEIN 290 446 - -
Lja4g3006 657 PANTHER OSJNBA0019D11.15 PROTEIN 22 291 - -
Lja4g3006 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Lja4g3006 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Lja4g3006 657 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 290 446 - -
Lja4g3006 657 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 22 291 - -
Lja4g3006 657 Gene3D Tetratricopeptide repeat domain 287 448 IPR011990 GO:0005515
Lja4g3006 657 TIGRFAM PPR: pentatricopeptide repeat domain 312 344 IPR002885 -
Lja4g3006 657 Pfam Pentatricopeptide repeat domain 164 218 IPR002885 -
Lja4g3006 657 Pfam PPR repeat 108 137 IPR002885 -
Lja4g3006 657 Pfam PPR repeat 312 339 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3006 Lja-Chr4 55750665 55758657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3006 140 425 Miscellaneous Gene Families AT4G11690 22.591 1.24e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3006 - - gmx:100796114 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3006 4 55750665 55758657 Lja4g3006 4 55750665 55758657 ECH