Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2998 ATGCCCACATCTTCAGAACTCCCTGAGGAAATGGCCTTCAACAATAGCAGGTCCAGAAGATCACCCAATTCTTCTTCCCCTTCAAATTTTTACTTCTGCACTACCCTTTTCTTCATTGTCCTCTTCACCATACCAGTACTTTTCCTCCTCCACGCCTCCACTACATCCTCCATATGCATCACCACCCTTGCCTCCCAAGCAAAACCTTGGTCTGGTGATCTTCGTTTAGCTAAATTTTCATGGAACCGCCTCCAATTTTCTCAAAATAAACCACCTCCAAAACCTCTCAAAATTGCTGTTTTCTCCAGAAAATGGCCTATTGGCACCACCCCTGGTGGAATGGAGCGCCATGCCTACACCCTCCACACCGCCTTAGCTCACCGCGGCCACAAAGTTCATGTCTTCACATCGCCCCAAGAAACTGCACCTTCTTCTTCTTCTTCGCCTTATATCCATTTCCATGAAGGCGAGCCGGGGAAATGGCGCTACAACAAGGCATGGGAACAGTTTGTGGAGGAAAACAAGGGAGAACCATTTGATGTTGTTCACTCAGAAAGTGTAGCTCTTCCTCACTGGCTAGCTCGCAACCTTTCAAACCTTGCAGTGTCTTGGCATGGAATAGCCCTTGAGAGCTTGCAATCGAGTATTTTCCAGGACTTAGCTCGTGGACCTGATGAACCCATGTCCCCTCTTTTCAACCAGAGCATACAGGGTGTTGTCCCTAAGGTGCTGAATGAGATAAGATTCTTCAGAAACTATGCTCATCATGTTGCTATTAGTGATAGCTGTGGTGAGATGCTAAGAGATGTGTACCAGATTCCTAGCAGAAGAGTCCATGTAATTATTAATGGGGTTGATGGGGAAGATTTCAGAGAAGATGTTTCATTGGGAAGGGAATTCAGAACCAAAATTGGCATTCCAAGAAATGCAAGTTTGGTACTTGGTGTAGCTGGAAGGTTAGTGAAGGACAAAGGCCATCCTCTGCTTCATGAAGCATTCTCAAGGCTAATAACAAAGCACCCCAATGTGTACTTGATCGTTGCGGGTTCTGGACCGTGGGGGAACCGGTACAAGGATTTAGGAAGCCAGGTTCTTGTTCTAGGATCAATGAGTCCTTCCAAGTTAAGAGCATTTTATAATGCTGTTGACATTTTTGTCAATCCGACACTACGACCACAAGGGCTTGATCTTACTTTGATGGAAGCAATGATGAGTGGGAAGCCTCTTTTGGCGTCAAGATTTCCAAGCATTAAAGGTACTATAGTGGTTGATGATGAATATGGCTTCATGTTCTCTCCAAATGTGGAGTCCCTGTTGGAGGCGCTCGAAGCGGTGGTGAAGGAAGGACCACAGAGGCTAGCAAGGAGAGGAAAGGCATGCCGGGAATTCGCTGCCTCAATGTTCACAGCAAAAAAGATGGCATTAGCATATGAGAGGTTATTTCTATGTATAAAAGATCATACATTTTGTGCCTACCCTTGA 1482 0.4568 MPTSSELPEEMAFNNSRSRRSPNSSSPSNFYFCTTLFFIVLFTIPVLFLLHASTTSSICITTLASQAKPWSGDLRLAKFSWNRLQFSQNKPPPKPLKIAVFSRKWPIGTTPGGMERHAYTLHTALAHRGHKVHVFTSPQETAPSSSSSPYIHFHEGEPGKWRYNKAWEQFVEENKGEPFDVVHSESVALPHWLARNLSNLAVSWHGIALESLQSSIFQDLARGPDEPMSPLFNQSIQGVVPKVLNEIRFFRNYAHHVAISDSCGEMLRDVYQIPSRRVHVIINGVDGEDFREDVSLGREFRTKIGIPRNASLVLGVAGRLVKDKGHPLLHEAFSRLITKHPNVYLIVAGSGPWGNRYKDLGSQVLVLGSMSPSKLRAFYNAVDIFVNPTLRPQGLDLTLMEAMMSGKPLLASRFPSIKGTIVVDDEYGFMFSPNVESLLEALEAVVKEGPQRLARRGKACREFAASMFTAKKMALAYERLFLCIKDHTFCAYP* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2998 493 Gene3D Glycogen Phosphorylase B; 295 464 - -
Lja4g2998 493 Pfam Glycosyl transferases group 1 312 458 IPR001296 GO:0016757
Lja4g2998 493 Pfam Glycosyltransferase Family 4 112 286 IPR028098 -
Lja4g2998 493 PANTHER GLYCOSYLTRANSFERASE 20 493 - -
Lja4g2998 493 CDD GT4_PimA-like 97 481 - -
Lja4g2998 493 MobiDBLite consensus disorder prediction 1 26 - -
Lja4g2998 493 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 110 481 - -
Lja4g2998 493 Gene3D Glycogen Phosphorylase B; 96 294 - -
Lja4g2998 493 PANTHER GLYCOSYLTRANSFERASE 20 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2998 Lja-Chr4 55201374 55203251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2998 9 493 Glycosyltransferase AT4G19460 64.072 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2998 - - aprc:113860121 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2998 4 55201374 55203251 Lja4g2998 4 55201374 55203251 ECH
Lja4g2998 4 55201374 55203251 Lja4g2998 4 55201374 55203251 PCT