LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g2903	ATGGTGATAGTTTCACTATCTTCCTCCCTTCCTGGAGGGAGGAACCTCTTCTCCTCCTTACCTTCAACGCCACCACCCCACATCCTCACCACCTCCTCCGCCACCCCTCCGCCGCCAATCCCAATCCCCAAATACCCACCTTCAAAAAAATCCCAAAACCCGCCACCACTACCGCCGAACCCGGGCCTCAAGCACCACCACAATTCCAAGTACTTCAAGCCCGTGGAACGCGGCGGCGTCATCTCGTCAGACGGCGACCGGTCCGTAATCATCGGGGAGTCCGGCGTGTCGTACCTCCTCCCCGGCGCCCCCTTCGAGTTCCAGTTCAGCTACTCGGAGACCCCGAAGGCAAAGCCCCTGGCGATTCGGGAGCCGGCGTTCCTCCCCTTCGCGCCGCCAACCATGCCGAGGCCGTGGACCGGAAAGGCACCGTTGAAGAGCGCGAAGGAGAAGAAGAAGAGGAGGAAGGTTCCGTTGTTCGATTCGTTGAACCCTCCTCCTCCTGAAACGAAGGGAGTGAAGAGCGTTGAAATGGCGAGGTCGTTTCGGCTTGGGAAGTACCCGAAGGAGGTGAAAACCAGGGAGGAGATACTTGGTGAACCTCTCAAACGCTGGGAGATACAAATGCTTGTTAAGCCTTTGGTGTCTGATAATAAACAGGTTAATCTTGGAAGGGATGGACTAACACATAACATGTTGGAGTTGATACATTCACATTGGAGGCGTCGCCGTGTCTGTAAAGTTCGTTGTAAAGGTGTTCCTACTGTAGATATGGATAATATTTGTCAAGTCATTGAGGAGAAAACAGGGGGGAAAATAATTCATCGAGTTGGTGGTGTAGTTTATCTTTTCCGTGGCAGAAACTACGACCATAGTACTCGTCCACAGTATCCAGTGATGCTTTGGAAGCCAGCTGCTCCAGTTTACCCAAAACTTATACAAGATGCTCCAGGAGGATTAACAAAAGCTGAAGCTGATGAATTACGGAAGAAAGGGAAAAACCTGTTACCAATATGTAAATTAGCCAAAAATGGAGTATACATCTCTTTGGTAAAGGATGTAAGAGGTGCTTTCGAAGGAAGTCCTTTGGTGAAGATTGATTGCAAGGGTTTAGATCCTAGTGATTACAAGAAATTAGGTGCCAAGCTCAAGGATTTGGTTCCTTGTGTGCTGTTATCTTTCGATGATGAGCAGATATTGATGTGGAGGGGCAAAGACTGGAAACCATGGTATCCACAACCTCCTCCGCTTTTCACTCCTACTGAAGCTGGCATTACAAAGAATTTGGACAATACAGGTGATTCTGATGATAATCAATCGAAACATGACCGCAACATGGTGAAAACAAGCCCAAAAATGTTGTCTCTGTGGAAGAGTGCAGTTGACTCGAGCAAAGCTTTGTTGCTGGAAGAATATGAACTTGGTCCTGATGCACTCTTGGAGAAGGTACAAGAATTTGAGGGTATTTCACAGGCCACAGAGCACTCCTATCCAGCATTTATTTTGCCAAGTGAAGATGGTGAAAAAGGTTCTTTTGCAAACTTTGAAATCGGTACAGAAGACGGTTACCCAAGTGACAGCTTACTTGCTGAGAATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGATGACTATGATGATGATGAAGATGATGGCTTGTATGATATAGTGGACTCTTCAGCTCAACCCAGATCGTTGCCTGTTGATAAGATTGTAAACAAGCTAAAACCAAGACAGGCTGAATAG	1755	0.4803	MVIVSLSSSLPGGRNLFSSLPSTPPPHILTTSSATPPPPIPIPKYPPSKKSQNPPPLPPNPGLKHHHNSKYFKPVERGGVISSDGDRSVIIGESGVSYLLPGAPFEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPLKSAKEKKKRRKVPLFDSLNPPPPETKGVKSVEMARSFRLGKYPKEVKTREEILGEPLKRWEIQMLVKPLVSDNKQVNLGRDGLTHNMLELIHSHWRRRRVCKVRCKGVPTVDMDNICQVIEEKTGGKIIHRVGGVVYLFRGRNYDHSTRPQYPVMLWKPAAPVYPKLIQDAPGGLTKAEADELRKKGKNLLPICKLAKNGVYISLVKDVRGAFEGSPLVKIDCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGKDWKPWYPQPPPLFTPTEAGITKNLDNTGDSDDNQSKHDRNMVKTSPKMLSLWKSAVDSSKALLLEEYELGPDALLEKVQEFEGISQATEHSYPAFILPSEDGEKGSFANFEIGTEDGYPSDSLLAENEEEEEEEEEEEEDDDYDDDEDDGLYDIVDSSAQPRSLPVDKIVNKLKPRQAE*	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g2903	584	MobiDBLite	consensus disorder prediction	30	62	-	-
	Lja4g2903	584	PANTHER	CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC	10	579	IPR044599	GO:0000373
	Lja4g2903	584	Gene3D	-	202	297	IPR035920	-
	Lja4g2903	584	SUPERFAMILY	YhbY-like	320	411	IPR035920	-
	Lja4g2903	584	SMART	CRS1_YhbY_2	320	403	IPR001890	GO:0003723
	Lja4g2903	584	SMART	CRS1_YhbY_2	202	285	IPR001890	GO:0003723
	Lja4g2903	584	ProSiteProfiles	CRM domain profile.	318	414	IPR001890	GO:0003723
	Lja4g2903	584	MobiDBLite	consensus disorder prediction	133	173	-	-
	Lja4g2903	584	Pfam	CRS1 / YhbY (CRM) domain	320	403	IPR001890	GO:0003723
	Lja4g2903	584	Pfam	CRS1 / YhbY (CRM) domain	207	285	IPR001890	GO:0003723
	Lja4g2903	584	MobiDBLite	consensus disorder prediction	17	69	-	-
	Lja4g2903	584	MobiDBLite	consensus disorder prediction	510	584	-	-
	Lja4g2903	584	SUPERFAMILY	YhbY-like	201	294	IPR035920	-
	Lja4g2903	584	Gene3D	-	320	414	IPR035920	-
	Lja4g2903	584	ProSiteProfiles	CRM domain profile.	200	296	IPR001890	GO:0003723
	Lja4g2903	584	Coils	Coil	525	554	-	-
	Lja4g2903	584	PANTHER	CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC	10	579	-	-
	Lja4g2903	584	MobiDBLite	consensus disorder prediction	419	447	-	-
	Lja4g2903	584	MobiDBLite	consensus disorder prediction	527	558	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g2903	Lja-Chr4	52326956	52343533	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g2903	-		-	gmx:100801953	800.045

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g2903	4	52326956	52343533	Lja4g2903	4	52326956	52343533	ECH