Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2866 ATGAAGTTTATGAAACTGGGATCTCGTCCAGACACCTTCTACACTTCAGAGTCTGTAAGGACTGTCTACTCTGAAGTTTCAAGCGACCTGATAATTCAAGTGAAAGGAATTAGATACCTTCTCCACAAGTTTCCCCTGCTTTCCAAGTGTTCGCGCCTGCAAAGGCTATGCTCAGACCACTTTCCTGATTCTCCAAAGCATCAAATAGTACAGCTTCCTGATTTTCCTGGTGGGGTGGAGGCCTTTGAACTGTGCGCGAAGTTCTGCTATGGAATCACCATCACTCTCAGCGCTCACAACATTGTCTCAGCACGGTGTGCTGCTGAATACTTGCAGATGACAGAGGATGCTGAGAAGGGAAACTTGATTTACAAGCTTGAGGTTTTCCTAAACTCCTGCATTCTTCATGGCTGGAAGGATTCCATTGTAACTCTACAAACCACAAAAGCATTAGCTCTAAACCCCACAAAGGTGAGCTTGTCACATAGCCATTCGCGACGTGTCAGGGATGATATTTCTTTCAGCGGAACCGAAAGTCTCAATCTCAGACACAAATCATCAAACAGATGGTGGGCTGAGGATTTATCAGAACTAAGCATAGACCTCTATTGGAGAACCATGATAGCTATCAAATCTGGTGGCAAGTTACCCTTTTATCTCATTGGTGACGCGCTGAAAGTTTATGTGTCTCGAATGCTACCAAATATCAAGAGAAATATTGAGCTAGCTGGATCTGATTCAGATTCAGATTCAACAATTGAAATAGCAACTTCAAAGCAGCGTTTGCTCTTGGAATCAATAGTAAGCTTGCTTCCATCTGAGAAAGGTGCTGTTTCTTGCAGCTTCCTTCTCAGACTCTTGAAAGCAGCCAACATTCTCAATGCTTCTTGTTCATCTAAAATGGAATTAGCAAGAAGAATAGGACTTCAATTAGAAGAAGCCACTGTGAATGATCTTCTAATTCCCTCAGTATCTTGCAAACATGATATGATTTATGAAGTGGATTTGATGATGAGTATATTGGAACAGTTCATGGTTCAAGGTCAGAGTCCACCAACTAGTCCTCCAAGATCAAGGATGGAATTTGAAAGAAGGAGGTCTCGCTCGGCGGAGAATATTAACTTTGATTTCCAGGAGAGTAGGAGGTCCTCTTCTGCATCTCATAGCTCAAAATTGAAGGTTGCAAAGCTTGTGGATAGGTATCTTCAGGAGATTGCCAGGGATGTGAATTTGCCTCTGTCGAAATTCATGGCTCTTGCTGAAATTATGCCAGAATTTGCAAGGCATGATCATGATGATCTATACACAGCTATTGACATTTATCTCAAGGCTCATCCACAACTGAACAAGAGCGAAAGGAAAAGACTATGTCGAATTCTAGACTGCAAAAAACTATCTCTGGAAGCCTGCATGCACGCTGCACAGAATGATCTACTCCCTCTAAGGGTGGTTGTCCAAGTTCTCTTCTTTGAGCAAGCTCGAGCTGCAGCATCCGGTAGCAAAGTCACTAACATGGCGAGCAACATTAAGGCACTACTCACTGCTCATGGCATTGACCCTTCAAAACACACAGCTCCATTGAGCACTACCACAAGTATACATGCTGATGACAATTGGAGTGTTTCTGGATTCAAGTCACCAAAGTCAATTACAAGGAATTCAACTCTCAGGATGAAGCTAGCTGAGGATGATGACTTGGATGAATCCAGTGATGGAATTGGGAGAAATTCTAGATTCAAGCCAAAACGAATGCTTAGCAAGTTGTGGTCTACCAATAGAAGCGCCACTACAAAGATTTAA 1800 0.4272 MKFMKLGSRPDTFYTSESVRTVYSEVSSDLIIQVKGIRYLLHKFPLLSKCSRLQRLCSDHFPDSPKHQIVQLPDFPGGVEAFELCAKFCYGITITLSAHNIVSARCAAEYLQMTEDAEKGNLIYKLEVFLNSCILHGWKDSIVTLQTTKALALNPTKVSLSHSHSRRVRDDISFSGTESLNLRHKSSNRWWAEDLSELSIDLYWRTMIAIKSGGKLPFYLIGDALKVYVSRMLPNIKRNIELAGSDSDSDSTIEIATSKQRLLLESIVSLLPSEKGAVSCSFLLRLLKAANILNASCSSKMELARRIGLQLEEATVNDLLIPSVSCKHDMIYEVDLMMSILEQFMVQGQSPPTSPPRSRMEFERRRSRSAENINFDFQESRRSSSASHSSKLKVAKLVDRYLQEIARDVNLPLSKFMALAEIMPEFARHDHDDLYTAIDIYLKAHPQLNKSERKRLCRILDCKKLSLEACMHAAQNDLLPLRVVVQVLFFEQARAAASGSKVTNMASNIKALLTAHGIDPSKHTAPLSTTTSIHADDNWSVSGFKSPKSITRNSTLRMKLAEDDDLDESSDGIGRNSRFKPKRMLSKLWSTNRSATTKI* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2866 599 PANTHER OS12G0117600 PROTEIN 1 152 IPR043454 -
Lja4g2866 599 Gene3D Potassium Channel Kv1.1; Chain A 15 120 IPR011333 -
Lja4g2866 599 ProSiteProfiles NPH3 domain profile. 189 494 IPR027356 -
Lja4g2866 599 Pfam NPH3 family 190 470 IPR027356 -
Lja4g2866 599 SUPERFAMILY POZ domain 20 115 IPR011333 -
Lja4g2866 599 PANTHER OS12G0117600 PROTEIN 154 597 IPR043454 -
Lja4g2866 599 ProSiteProfiles BTB domain profile. 28 98 IPR000210 GO:0005515
Lja4g2866 599 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 154 597 - -
Lja4g2866 599 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2866 Lja-Chr4 50248440 50251917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2866 26 539 EF-hand Containing Proteins AT3G44820 34.938 7.28e-87 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2866 - - gmx:100792829 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2866 4 50248440 50251917 Lja4g2866 4 50248440 50251917 ECH