Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2848 ATGAACTGCCTGTCGCAACTGTCATCGTATACTGCTACCATAGTCGGAAGGACCGCTCGATTCATCGCCGCGAACCGCTCTTCTTCTTCTTCTTCCATTCTCTCGTTCCCGAGGAAATCAGCGTTTTCCGGTGTTAGCTCTTGCCATTCAGAACTCTTCCTCAACCGGTTTCATTTTCGGTGCTATTCCGCCCGAAAAGGGCGCAAAACCGCTTCTTCTCGGTTGCCGAAGGTGGAGCCTGAAGCGGTGATGGAGCAGGAGAAGGACGCTTTCTATGTGGTGCGGAAAGGGGACATTGTTGGAGTCTATAACAGTCTCAGTGACTCTCAGGCTCAAGTTGGATCTTCTGTATGCGATCCTCCTGTTAGTGTATACAAGGGATATTCGTTGTCGAAGGGCACTGAGGAATATCTTCTCTCGCATGGACTAAAAAATGCTTTGTACACTATTGAAGCCTCTGAATTGAAAGAGGATTTGTTTGGCTTGCTTGTACCTTGCCCTTTCCAGGATCCTTCTTCTACCAAAGGAGCCACATCAATTGAGGATGTATCTAAAAAGAGGTCTCTGGAAATGCTTGAACAAGATAATGTGAGAGTAACTGGTCCTACATCCATCTCTGATGATCCCTTGAGAAAGCAGGTTAAATTAGAAAATGATGCAGTAGCTGAAGCCTCTTCACTTGAAACTCAGACATGTCTTCTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGAAAAGCTGGTGCTGGGGCTATTTTGCGATCTACCGATGGGAGTTTGATTTGTAGGTTGCGTGAAGGCGCGGGTATAGCAACCAACAATGCTGCTGAATACCGTGCAATGATATTGGGAATGAGATATGCTCTTAAAAAGGGGTTTACTGGCATTCGTATCAAAGGTGACTCTAAACTTGTTTGCATGCAGATTGATGGTTCATGGAAGGTCAAGAATGCGAACTTGTCTTCATTGTATAAGGTGGCAAAAGAACTGAAGGATAAATTTTTATCATTCCAGATCAGTCATGTTCTAAGGAACTTCAACTCTGAGGCTGATGCTCAAGCAAACTTGGCCATCAATCTTGCTGATGGCCAAGTCCAGGAAGAGTGTGTAGATTAA 1116 0.4498 MNCLSQLSSYTATIVGRTARFIAANRSSSSSSILSFPRKSAFSGVSSCHSELFLNRFHFRCYSARKGRKTASSRLPKVEPEAVMEQEKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCDPPVSVYKGYSLSKGTEEYLLSHGLKNALYTIEASELKEDLFGLLVPCPFQDPSSTKGATSIEDVSKKRSLEMLEQDNVRVTGPTSISDDPLRKQVKLENDAVAEASSLETQTCLLEFDGASKGNPGKAGAGAILRSTDGSLICRLREGAGIATNNAAEYRAMILGMRYALKKGFTGIRIKGDSKLVCMQIDGSWKVKNANLSSLYKVAKELKDKFLSFQISHVLRNFNSEADAQANLAINLADGQVQEECVD* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2848 371 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 102 366 - -
Lja4g2848 371 Pfam Reverse transcriptase-like 236 357 IPR002156 GO:0003676|GO:0004523
Lja4g2848 371 PANTHER PUTATIVE-RELATED 102 366 - -
Lja4g2848 371 SUPERFAMILY Ribonuclease H-like 231 355 IPR012337 -
Lja4g2848 371 CDD RNase_HI_like 234 358 - -
Lja4g2848 371 Gene3D - 231 363 IPR036397 GO:0003676
Lja4g2848 371 ProSiteProfiles RNase H type-1 domain profile. 228 359 IPR002156 GO:0003676|GO:0004523
Lja4g2848 371 Gene3D - 88 139 IPR037056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2848 Lja-Chr4 49126797 49139901 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2848 - - lja:Lj0g3v0289759.2 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2848 4 49126797 49139901 Lja4g2848 4 49126797 49139901 ECH