Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2824 ATGGCTGCTGAAACTAAAAGCGTTGTTGTTGAGTCCACTCTAAAGAGGCAAAAAGATGATGAAGAAAATGGAGTCTCCATTGGTAATCACTCAGATGGTAATGGTTTATCATCAGTGATTCCGGGTTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTAGAAAAGATTTTGTTTCAAGGGAAGTCTGATTACCAGAAAGTCATGGTCTTCCAGTCATCAACGTATGGCAAGGTTCTTGTTTTGGATGGTGTTATTCAGCTAACAGAAAGGGACGAATGTGCTTACCAAGAAATGATGACTCATCTTGCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTTTGGTTATCGGTGGAGGTGATGGAGGGATCCTACGGGAAATATCACGTCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAAAATGGTAGTTGATGTCTCCAAACAGTTTTTCCCTGATGTTGCAGTAGGGTTTGATGATCAACGTGTGACACTTCGCATCGGTGATGGAGTTGCATTTTTGAAGGAAGCTCCAGAAGGATCTTATGATGCAGTTATAGTGGATTCATCTGACCCTATTGGTCCTGCTCAGGAGCTTTTTGAGAAGCCCTTTTTCGAGTTGGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTATTTGTACTCAGGCAGAAAGTATATGGCTTCATATGCATATCATTGAGGACATTGTGGCTAATTGTCGTCAGATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGACCTCCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAAAGAGTGTCAGAAATCCGTACGACCACTTAAATTTTACAACTCTGAGATCCATACTGCAGCTTTCTGTTTGCCATCATTTGCGAAGAGAAAGATTGGTTCTGAAGCTACTTAA 996 0.4177 MAAETKSVVVESTLKRQKDDEENGVSIGNHSDGNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMMTHLALCSIPNPKKVLVIGGGDGGILREISRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFDDQRVTLRIGDGVAFLKEAPEGSYDAVIVDSSDPIGPAQELFEKPFFELVAKALRPGGVICTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDEKECQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSEAT* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2824 331 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 41 278 IPR030374 -
Lja4g2824 331 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 120 133 IPR030373 -
Lja4g2824 331 Gene3D Vaccinia Virus protein VP39 94 331 IPR029063 -
Lja4g2824 331 TIGRFAM speE: spermidine synthase 43 321 IPR001045 GO:0003824
Lja4g2824 331 CDD AdoMet_MTases 119 230 - -
Lja4g2824 331 MobiDBLite consensus disorder prediction 1 33 - -
Lja4g2824 331 Hamap Polyamine aminopropyltransferase [speE]. 42 327 IPR001045 GO:0003824
Lja4g2824 331 Pfam Spermine/spermidine synthase domain 99 286 - -
Lja4g2824 331 Pfam Spermidine synthase tetramerisation domain 42 96 IPR035246 -
Lja4g2824 331 PIRSF Spermidine_synth 32 331 IPR030668 GO:0006595
Lja4g2824 331 MobiDBLite consensus disorder prediction 11 26 - -
Lja4g2824 331 PANTHER SPERMIDINE/SPERMINE SYNTHASE 7 330 IPR001045 GO:0003824
Lja4g2824 331 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 39 326 IPR029063 -
Lja4g2824 331 PANTHER SPERMIDINE SYNTHASE-RELATED 7 330 - -
Lja4g2824 331 Gene3D Spermidine synthase, tetramerisation domain 35 93 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2824 Lja-Chr4 47474701 47479592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2824 K00797 - gmx:100812978 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2824 4 47474701 47479592 Lja4g2824 4 47474701 47479592 ECH