Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2811 ATGAGGAATTGGATGAGCATGGCGAGAGGCGTTGCAGTAGCAAACTCCACTCATCTCCTACCCACCACGTCTCTGCTTCCGCTTTCCTCCGCCTCCTCTACACTCAATCACAAAACCATATCTTTCTCTTTCACCAGAACGCCGCCGCCCCCGTATCTCATTTCTGTTCTCACTCCCCGTCGCCGCCTCCTTTCTTCTTCTCCCGCCGCCGCTGATCACAATTTCTCTGATTCCGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTCACTGCGTTTCGACTTCAATGAAAGGTTCAGAGGTTCTTCTTAAAGGGTTGACTTACCCCGAGCTTGAAAAATGGGTTCAATCACATGGATACAGGCCTGGGCAGGCAATGATGTTATGGAAGCGTATATATGGAAACAACATTTGGGCCAATCATGTTGATGAGTTGGAAGGTATAAACAAAGATTTCAAGAAGATGTTGAGTGAAAATGCCAAGTTCAAAGCACTTGCTCTGAAAGAAATTCACACAGCATCGGATGGTACTAGGAAGATTTTATTCACGTTGGATGACGGCCTGGTCATAGAAACAGTTGTCATACCTTGTGATAGAGGCAGGACTACAGTGTGTGTTTCAAGTCAAGTTGGATGTGCCATGAATTGTCAATTTTGCTATACTGGAAGAATGGGTCTTAAGAGACATCTTACTGCCGCAGAAATAGTAGAACAGGCTGTTTTTGCTAGACGGCTTCTCACAAGTGATGTTGGCTCCATTACGAATGTTGTCTTTATGGGCATGGGAGAACCACTTCATAACATTGACAATGTCATTAAAGCTGCAAATATTATGGTGGATGGACAAGGGCTTCAATTCAGCCCCCGCAAGGTCACTGTTTCAACTAGTGGGCTTGTTCCGCAGCTCCGGCGTTTCCTCCATGAATCCAACTGTGCATTAGCTGTTAGTTTGAATGCAACTACTAATGAGGTAAGAAACTGGATCATGCCTATAAATCGGAAGTATAAACTGGAACTGCTTCTTGAGACTCTTCGGGAGGAGCTTTCCTTAAAAAACAACTACAAAGTTCTATTTGAGTATGTGATGCTTGAAGGAATCAATGACAGCAATGAAGATGCAGAGAGGCTTATCAAGCTCGTGAAGGGCATTCCTTGCAAGATCAATCTCATCTCGTTCAATCCGCATAACGGGTCCTTCTTCAGACCTACCAAAGATGAAAGGATGATTGAATTCCGAAATACATTGGCTGCAGCAGGAGTTGTGGTTTTTCTACGACTCAGTAGAGGCGATGATCAGATGGCTGCTTGTGGTCAATTAGGGAAGCCTGGAACCATTCAAGCTCCATTGCTCCGTGTACCAGAACAATTCCAAATTGCAGTTGGAAGTTCAGCGTGA 1398 0.4471 MRNWMSMARGVAVANSTHLLPTTSLLPLSSASSTLNHKTISFSFTRTPPPPYLISVLTPRRRLLSSSPAAADHNFSDSGEEEEEEEEEEGHCVSTSMKGSEVLLKGLTYPELEKWVQSHGYRPGQAMMLWKRIYGNNIWANHVDELEGINKDFKKMLSENAKFKALALKEIHTASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLTSDVGSITNVVFMGMGEPLHNIDNVIKAANIMVDGQGLQFSPRKVTVSTSGLVPQLRRFLHESNCALAVSLNATTNEVRNWIMPINRKYKLELLLETLREELSLKNNYKVLFEYVMLEGINDSNEDAERLIKLVKGIPCKINLISFNPHNGSFFRPTKDERMIEFRNTLAAAGVVVFLRLSRGDDQMAACGQLGKPGTIQAPLLRVPEQFQIAVGSSA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2811 465 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 104 441 IPR027492 GO:0030488|GO:0070475
Lja4g2811 465 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 101 446 IPR027492 GO:0030488|GO:0070475
Lja4g2811 465 SUPERFAMILY Radical SAM enzymes 201 420 - -
Lja4g2811 465 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 65 448 - -
Lja4g2811 465 MobiDBLite consensus disorder prediction 67 95 - -
Lja4g2811 465 Pfam 4Fe-4S single cluster domain 212 304 - -
Lja4g2811 465 Gene3D Aldolase class I 166 446 IPR013785 -
Lja4g2811 465 SFLD adenosine C2 methyltransferase (RlmN-like) 100 442 IPR004383 GO:0006364|GO:0008173
Lja4g2811 465 PANTHER 23S RRNA METHYLTRANSFERASE 65 448 IPR040072 -
Lja4g2811 465 Pfam Radical SAM superfamily 208 373 IPR007197 GO:0003824|GO:0051536
Lja4g2811 465 Gene3D - 102 163 - -
Lja4g2811 465 ProSiteProfiles Radical SAM core domain profile. 199 432 IPR007197 GO:0003824|GO:0051536
Lja4g2811 465 CDD Radical_SAM 212 337 - -
Lja4g2811 465 SFLD Radical SAM 100 442 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2811 Lja-Chr4 47159437 47177539 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2811 K06941 - gmx:100813692 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2811 4 47159437 47177539 Lja4g2811 4 47159437 47177539 ECH