Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2800 ATGGCAGACAACAACGACCTCCTCCACACCGCGATCAGAAGGCTCGCCTCGGTAGCCAACCACCTCCTCATTTCCCCTCCCTCCGCCGCACTCGCACCTGAACTTGCGCTCTGCCACACTTCCAGTTCCAGCAGCACCTACCAACGGGTTCACGGCGATGTTCCCTCTCACGACGTCGTTTGGAGTACCGCTTCCGATGACTCTGGCAAGGACTTCACTGACATTCTGTACGAGAAGGCTGTTGGGGAAGGAATAGCCAAGATTACTATTAATAGGCCAGAGAGAAGGAATGCCTTTCGGCCCCATACGGTTAAGGAGCTTATCCGCGCTTTCAATGATGCAAGAGACGATGCCTCTGTTGGGGTCATCATTCTCACCGGGAAGGGAACCCAGGCATTTTGTAGTGGTGGTGACCAGGCCTTGAGGACCGAAGATGGATATTCTGATTATGAAAATATTGGTCGCCTTAATGTGTTAGACTTGCAGGTGCAGATCCGCCGCCTTCCAAAGCCAGTAATTGCAATGGTAGCAGGTTATGCTGTTGGAGGAGGACATATATTACATATGGTTTGTGATCTAACCATTGCAGCACATAATGCCATATTTGGCCAAACTGGACCTAAGGTAGGAAGCTTTGATGCTGGTTATGGAAGCTCTATCATGTCCCGTTTGGTAGGTCCCAAAAAAGCACGTGAAATGTGGTTTCTCACTAGGTTCTATACCGCTGTTGAAGCAGATAAAATGGGCCTTGTCAATACTGTTGTACCACTAGAAAATTTGGAGAAAGAAACAATAAAATGGTGTCGGGAGATACTCAGGAACAGCCCAACTGCGATTCGGGTTCTTAAGTCAGCTCTTAATGCAGTGGATGATGGGCATGCTGGACTTCAGGAAATTGGTGGGAATGCAACCCTGATATTTTATGGAACTGAGGAAGCCAATGAAGGGAAGACAGCATATATGCAGCGTAGACCCCCGGATTTTTCTAAGTTTCCTCGGCGACCATAA 1008 0.4861 MADNNDLLHTAIRRLASVANHLLISPPSAALAPELALCHTSSSSSTYQRVHGDVPSHDVVWSTASDDSGKDFTDILYEKAVGEGIAKITINRPERRNAFRPHTVKELIRAFNDARDDASVGVIILTGKGTQAFCSGGDQALRTEDGYSDYENIGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAAHNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTAVEADKMGLVNTVVPLENLEKETIKWCREILRNSPTAIRVLKSALNAVDDGHAGLQEIGGNATLIFYGTEEANEGKTAYMQRRPPDFSKFPRRP* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2800 335 SUPERFAMILY ClpP/crotonase 71 331 IPR029045 -
Lja4g2800 335 Pfam Enoyl-CoA hydratase/isomerase 83 329 IPR001753 GO:0003824
Lja4g2800 335 Hamap 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 61 334 IPR010198 GO:0008935|GO:0009234
Lja4g2800 335 CDD crotonase-like 75 271 - -
Lja4g2800 335 PANTHER NUCLEOSIDE-DIPHOSPHATE-SUGAR EPIMERASE 10 335 IPR010198 GO:0008935|GO:0009234
Lja4g2800 335 ProSitePatterns Enoyl-CoA hydratase/isomerase signature. 173 193 IPR018376 GO:0003824
Lja4g2800 335 Gene3D - 275 323 IPR014748 -
Lja4g2800 335 Gene3D - 57 274 - -
Lja4g2800 335 TIGRFAM menB: naphthoate synthase 72 331 IPR010198 GO:0008935|GO:0009234
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2800 1 335 Acyl Lipid Metabolism Gene Families AT1G60550 78.107 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2800 K01661 - gmx:100807101 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2800 4 46636254 46640148 Lja4g2800 4 46636254 46640148 ECH