Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2799 ATGCAATTGCGCAACGTAAAATCATACACACCTAACCAGACAAACGCAAAGTACATGTTGTCATGGACTACACAAAAAGTTCCCAGATGCTGCTGGTTTCAAGTTTCAACACGGAAACTGCGGCCCTTTATCTCACTCAACTCTTATGTCTCTAACTCTTACCACTTGAGCTATCGTTCGGGGACGAAACTGTGGCCGTTGATGCAACAGCGCCACCAATCACTCTCCTTCTCCTTCATCAGAGCCCAAACAACTACCACACCTCGAAATCCTAGTGACTGTGTCTACACCAAGAACCGCGAAATCGATGCTTTCATAAAATCCAGGGACCTGAACTCTGCACTTGCAGTGTTCCACACCATGCCACTGCGTGACACTGTCACCTACAACTTGCTCATCTCCGCGTGGTGCTTTCCACCGGAACAGGCTCTTCATCTCTACGGCGAAATGGGTCTGCTCGGAATCAGAGAAACCTCAACCACGTTCTCCTCTGTTTTAGCTGTCTGTGCCCGTTCTGGGTTCCATAGAGAAGGTGTTCAGGTGCATTGTAGGGTGGTCAAGTTTGGATTTTTGTCGAATGTGTTCGTTGGTGGCACGCTTGTTGGTTTCTACTTGAATGTGGGACTGAGGGAGGTTGCACGGGAATTGTTTGATGAGTTGCCTGAGAGAAATTTGGCTGTGTGGAATGTGTTGCTGCGTGGGTTTTGTGAACTGGGTTGTGTTGAAGAATCGCTTAATTATTACTCTCGGATGTGTTTTGATGGTGTGGAGCCAAATGGGGTTACATTTTGTTATTTGCTTAAGGTGTGCAGTAACCATAGACGGTTGAATGAGGGGAAGAAGCTTCAGAGCTGCATTTTGAAGATGGGTTTTGTGGAATCTAACATTTTTGTTGCCAATGCTTTGGTGGATTTTTACTCTGCGTGTGGGTGCTTGGTTGGTGCTAAAAAGTCTTTTGAAGCCATTCCGGTGGAGAATGTCATTTCGTGGAACTCGTTGGTTTCTGTTAATGCAGACAATGATTTGTTATGTGATGCTTTGGAGCTATTTACTGTTATGCAGCTGTGGGGACAGTCACCATCCGTTCGCTCATTGGTGGGTTTATTGAATTCGTGTAGCAGAGCTGAAGAAATCGGTTTAGGGAAACAGATTCATTGCCATGCTCTAAAATTGGGTTTTGATGAAGGGAGTGTGCATGCCCAATCTGCTTTGATTGATATGTATGGAAAATGCAGCGACATTGAGAGCTCTGTAGCTGTATTTGAATCCCTTACCAAGAGAACTTTAGAATGTTGCAACTCATTGATGACCTCTTTATCTCATTGTGGTGCCACTCAAGATGTGGTGGAGTTGTTTGGTTTAATGATCGATGAAGGTCTTATGCCAGATGAAGTAACCTTCTCCACCACACTAAAGGCATTGTCAGTGTCTGCTTCAGCAACCTTCACGAGCTCCCAGTTGCTGCATTGTTTTGCATTAAAATCTGGAGTTGAAGGAGATGCTGCGGTTGCTTGTTCCCTTATGGATGCATATTCTAGATGTGGGCATGTGGAACTTTCTCTTCAGATTTTTGAGACCCTTTCTTCCCCAAATGCTATTTGCTTCACATCTATGATCAATGGATATGCCCGAAATGGAATGGGGAAACAAGGACTCGCAGTTCTTCATGCTATGGTTGAGAAGGGCTTAAAACCTGATGAAATTACCTTCTTATGCGCATTAACCGGGTGTAATCACACGGGAATGGTCAAGGAAGGAAGAATACTATTTGACTCGATGAAATCTGTTCATGGGGTTCAACCAGATCAGCGGCATTTTTCATGCATGGTGGATCTTCTTTGCCGCGCAGGACTTCTACATGAAGCTGAAGAGTTACTGCTACAGACACCAGATAAAAGAGACTGTTTTATGTGGAGCTCTTTGCTGCGAAGTTGCAGGAGCCACAAGAATGAAGAGGTTGGAACAAGAGCAGCACAAGTGTTAGTTGAACTAGACCCAGATGATCCTGCAGTGTGGTTGCAAGCTTCAAATTTTTATGCTGAGATAGGGAATTTTGATGCCTCAAGGGAAATCAGAGAGGTTGCTCTAGCAAGGAAGATGACTAGGGAGATCGGTCATATGGCGGCTCACAGAGCTGCAGCTGGAAGCATGATGTGTGACAACATTAGCATTCTTGAAGAACTTAAAAACATGGATATTGAAGAAGAAACTGAAGCAGAACTTTCTGACATCCCTTCATGGAGAAGCGAGCGCGGTGGCAAGGTTCTTGTGAATGTTGATAGCTTTGGTGCTGCTGGAAATGGAGAATCTGATGACACTGAGGCTTTTCAGAAAGCATGGAACGTTGCTTGCTCTACACCAAAATCTGTTCTCCTAGTTCCCCAAGGACGCCGTTACCTTGTTAATGCAACCAAATTTAAAGGGCCTTGTGCAGACAAGTTAATCATCCAGATTGATGGAACATTGGTTGCTCCAGATGACCCCAAAAACTGGGATCCAAAACTTCCGCGGGTTTGGCTCGACTTTTCTAAATTGAACAAAGCTGTTTTCCAAGGCTCTGGAGTTATTGATGGCTCAGGAAGCAAATGGTGGGCAGCATCTTGCAAAAAGAACAAGTCAAATCCTTGCAGAGGTGCACCAACAGCATTAACCATTGAATCAAGCTCAGCAATAAAGGTGACAGGATTAACTATCCAGAATAGTCAACAGATGCATTTTACCATTTCAAGATGTGATTCTGTTAGAATTTATGGCGTGAAAGTGTCAGCACCAGGAGACAGCCCAAACACTGATGGAATTCATATCAGTGAATCGACAAATGTTATTGTACAAGACTGCAAAATCGGAACAGGAGATGATTGCATATCAATTGTTAATGCTAGCTCTAATATCAAAATGAAGAGAATTCATTGTGGACCAGGACACGGAATCAGCATTGGAAGCCTGGGGAAAGACAACTCAACCGGCGTAGTTACAAAAGTGATTTTGGATACAGCATTTCTCCAGGGCACCACCAATGGCCTCAGGATAAAGACTTGGCAGGGAGGTTCTGGATATGTTCGAGGGGTGCGGTTTCAGAATGTGAGGGTGGAAAACGTATCAAACCCCATTATCATAGATCAATTTTACTGTGATTCGCCCTCCACTTGTCAAAACCAGTCATCAGCATTGGAGGTGAGCCAGATCATGTACCAGAATATAAGTGGGACAACAATGAGTGGTAAAGCCATTAAGTTTGACTGCAGTGACACAGTTCCGTGCAGCAAATTAGTGTTAAGCAATGTGGACTTAGAGAAACAGGATGGCACTGTGGAAACATACTGCCATTCAGCTCAAGGTTTTGGCTATGGAGTAGTTCATCCTTCTGCTGATTGCCTTAATTCCAATGATAAAACATCACAAGCTTCTGTTGATGAACCTGAATCTATTACTCAGGACTATATTCGTCACACTGAACTATAA 3462 0.4405 MQLRNVKSYTPNQTNAKYMLSWTTQKVPRCCWFQVSTRKLRPFISLNSYVSNSYHLSYRSGTKLWPLMQQRHQSLSFSFIRAQTTTTPRNPSDCVYTKNREIDAFIKSRDLNSALAVFHTMPLRDTVTYNLLISAWCFPPEQALHLYGEMGLLGIRETSTTFSSVLAVCARSGFHREGVQVHCRVVKFGFLSNVFVGGTLVGFYLNVGLREVARELFDELPERNLAVWNVLLRGFCELGCVEESLNYYSRMCFDGVEPNGVTFCYLLKVCSNHRRLNEGKKLQSCILKMGFVESNIFVANALVDFYSACGCLVGAKKSFEAIPVENVISWNSLVSVNADNDLLCDALELFTVMQLWGQSPSVRSLVGLLNSCSRAEEIGLGKQIHCHALKLGFDEGSVHAQSALIDMYGKCSDIESSVAVFESLTKRTLECCNSLMTSLSHCGATQDVVELFGLMIDEGLMPDEVTFSTTLKALSVSASATFTSSQLLHCFALKSGVEGDAAVACSLMDAYSRCGHVELSLQIFETLSSPNAICFTSMINGYARNGMGKQGLAVLHAMVEKGLKPDEITFLCALTGCNHTGMVKEGRILFDSMKSVHGVQPDQRHFSCMVDLLCRAGLLHEAEELLLQTPDKRDCFMWSSLLRSCRSHKNEEVGTRAAQVLVELDPDDPAVWLQASNFYAEIGNFDASREIREVALARKMTREIGHMAAHRAAAGSMMCDNISILEELKNMDIEEETEAELSDIPSWRSERGGKVLVNVDSFGAAGNGESDDTEAFQKAWNVACSTPKSVLLVPQGRRYLVNATKFKGPCADKLIIQIDGTLVAPDDPKNWDPKLPRVWLDFSKLNKAVFQGSGVIDGSGSKWWAASCKKNKSNPCRGAPTALTIESSSAIKVTGLTIQNSQQMHFTISRCDSVRIYGVKVSAPGDSPNTDGIHISESTNVIVQDCKIGTGDDCISIVNASSNIKMKRIHCGPGHGISIGSLGKDNSTGVVTKVILDTAFLQGTTNGLRIKTWQGGSGYVRGVRFQNVRVENVSNPIIIDQFYCDSPSTCQNQSSALEVSQIMYQNISGTTMSGKAIKFDCSDTVPCSKLVLSNVDLEKQDGTVETYCHSAQGFGYGVVHPSADCLNSNDKTSQASVDEPESITQDYIRHTEL* 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2799 1153 TIGRFAM PPR: pentatricopeptide repeat domain 533 567 IPR002885 -
Lja4g2799 1153 TIGRFAM PPR: pentatricopeptide repeat domain 227 259 IPR002885 -
Lja4g2799 1153 TIGRFAM PPR: pentatricopeptide repeat domain 431 464 IPR002885 -
Lja4g2799 1153 Gene3D Tetratricopeptide repeat domain 275 388 IPR011990 GO:0005515
Lja4g2799 1153 Gene3D Tetratricopeptide repeat domain 389 482 IPR011990 GO:0005515
Lja4g2799 1153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Lja4g2799 1153 Pfam Glycosyl hydrolases family 28 788 1108 IPR000743 GO:0004650|GO:0005975
Lja4g2799 1153 Pfam PPR repeat 506 525 IPR002885 -
Lja4g2799 1153 Pfam PPR repeat 161 190 IPR002885 -
Lja4g2799 1153 Pfam PPR repeat 431 460 IPR002885 -
Lja4g2799 1153 PANTHER - 734 1136 - -
Lja4g2799 1153 Pfam PPR repeat family 224 271 IPR002885 -
Lja4g2799 1153 Pfam PPR repeat family 530 577 IPR002885 -
Lja4g2799 1153 Pfam PPR repeat 598 626 IPR002885 -
Lja4g2799 1153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Lja4g2799 1153 Gene3D Tetratricopeptide repeat domain 483 724 IPR011990 GO:0005515
Lja4g2799 1153 Gene3D - 747 1151 IPR012334 -
Lja4g2799 1153 Gene3D Tetratricopeptide repeat domain 94 252 IPR011990 GO:0005515
Lja4g2799 1153 PANTHER BNAA08G20470D PROTEIN 734 1136 - -
Lja4g2799 1153 SMART pbh1 961 981 IPR006626 -
Lja4g2799 1153 SMART pbh1 1020 1041 IPR006626 -
Lja4g2799 1153 SMART pbh1 911 937 IPR006626 -
Lja4g2799 1153 SMART pbh1 938 959 IPR006626 -
Lja4g2799 1153 ProSitePatterns Polygalacturonase active site. 968 981 IPR000743 GO:0004650|GO:0005975
Lja4g2799 1153 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Lja4g2799 1153 SUPERFAMILY Pectin lyase-like 755 1127 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2799 Lja-Chr4 46623737 46633043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2799 717 1153 Glycoside Hydrolase AT1G23460 69.476 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2799 - - pvu:PHAVU_003G061700g 1696.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2799 4 46623737 46633043 Lja4g2799 4 46623737 46633043 ECH