Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2778 ATGGCATTGAGTAACAATGTAATAGGAGCCATTAACTTCATTGCTGTGCTCCTATCAATCCCAATCATTGGTGCTGGGATCTGGCTAACAACCGAGCCAGCCGATTCATGCGTCAAAATCCTACAATGGCCCGTCATCGTTCTAGGGGTTTTGGTCTTTGTGGTGGCTCTGGCCGGGTTCATCGGAGCCTTTTGGAGAATCCCCTCGCTTCTCGTGTTCTACCTTGTTTCCATGTTTGTGCTCATTGTGTTGCTCGTTTCATTGGTGATTTTTGTCTATGCGGTCACGCTTAGAGGCCATGGAGATATTGAACCCAATCGGTCATACTTGGAATATCAGATGGATGATTTCTCTATTTGGCTTCGTCGAAGGGTGAGAAGCTCGAACAAGTGGGATCACATTAGAAGCTGTATTAGCTCCTCAAACACGTGTGCTGAGTTGAACCAACGTTATCGACTTGCTCAGGACTTCTTTGATGCACACTTATCTCCCATGCAGTCAGGGTGCTGTAAGCCACCAACCAAATGTGGCTACACATTTGTGAACCCAACCTATTGGATTAGCCCAATTGACAACGCTGCAGACAAGGATTGCATGCAATGGAGCAACGAACCAACAAAACTTTGCTATAACTGCGACTCATGCAAGGCTGGTTTATTGGCAACCCTTAGAACCGAGTGGAGGAGAGCTAATGTCATATTGATCGTTGCCGTGGTGGCTTTAATTGTAGTGTATCTGATGGGGTGGTTTGCCTTTAGAAATGCCAAAACTGAGGAGCTCTTTCGCAAATACAAGCAAGGCTACACTTAA 810 0.4605 MALSNNVIGAINFIAVLLSIPIIGAGIWLTTEPADSCVKILQWPVIVLGVLVFVVALAGFIGAFWRIPSLLVFYLVSMFVLIVLLVSLVIFVYAVTLRGHGDIEPNRSYLEYQMDDFSIWLRRRVRSSNKWDHIRSCISSSNTCAELNQRYRLAQDFFDAHLSPMQSGCCKPPTKCGYTFVNPTYWISPIDNAADKDCMQWSNEPTKLCYNCDSCKAGLLATLRTEWRRANVILIVAVVALIVVYLMGWFAFRNAKTEELFRKYKQGYT* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2778 269 PANTHER TETRASPANIN/PERIPHERIN-RELATED 1 268 - -
Lja4g2778 269 Pfam Tetraspanin family 6 246 IPR018499 GO:0016021
Lja4g2778 269 PRINTS Transmembrane four family signature 38 64 - -
Lja4g2778 269 PRINTS Transmembrane four family signature 65 93 - -
Lja4g2778 269 PRINTS Transmembrane four family signature 6 29 - -
Lja4g2778 269 PANTHER TETRASPANIN-8-RELATED 1 268 IPR044991 GO:0009734|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2778 Lja-Chr4 45615922 45618021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2778 1 269 Miscellaneous Gene Families AT5G46700 66.914 5.10e-127 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2778 - - gmx:100789266 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2778 4 45615922 45618021 Lja4g2778 4 45615922 45618021 ECH
Lja4g2778 4 45615922 45618021 Lja4g2778 4 45615922 45618021 PCT