Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2773 ATGTCAGCAAGAAAGAAGATCACATCTCCGCCGCCGGAGCAAGAACTGCCTCCACCGCCTCAACATCCGCCACCCCGTCCGCGGCAGCCGGCACCACCTGACGAAGTCGCACCACTACCCGACGATGACATGTTCGACTTGCTACCCCCTCTGGCTATCCCGCCGCCGCCGTCTCAACCTAGCCCAGGGCTACCGGTACTGCCGCTGTCCTCACATTCACTTCCCGTCGACCTTGACTGGTTCGACAAATACAAAGACGACGATGGTGATGACTCCGATGGCTCACTCCACAACTTTCCGACGAGTCCACAGAGTGTTGATGGTTTCGGCATTCTTGATCGATACGCAGCTGAAACCAACAACTCCTCCTTCATAACTTCCCTCAGTCTTGATGATTATTACACTTCTGTACAACTTGCCAGTTTTCACGGCGACGATCCAATTCCAATTCCATTGTCCCCTTCCGCCAAATTGGTGGGTGCTGGTGTTCAGAATCTTGGGTTAACGTGTTTCATGGGTTCAATTCTTCAGTGCCTCACCCACACAATCAACCTGTTCCAGGGTCTCCGTTCTTACACTCATGATTGCCAGGATGATGCGGGTGATTTCTGTGTTTTCTGTGCCCTCCGTTCACACATGGAGTCTTGCTTTACACCTGCCAGAAGTGTGGTTTGGCCTACATTTCTTGCCGAAAATTTGAACCAATTTTCAGCTGGTTTTCGAAGAGACAAGCAGGAGGATGCACAAGAGTTTATGAACCGTGCCTTGGATAAACTGCAAGGTTGCTTTCCAGAAGGACACCCTAATCTTGTTCAAGAAATCTTTGGTGGTCGTTGTGTTAGCCGACTTCGATGCAGTAACTGTGGTCACTGTTCTGATACATTTGAATCGATTATTGACCTGAGCTTAGGGATAGATGATATCAATACCATTAAGGATGCACTGGATTCATACTTTAAGGTGGAAAAGATTGATGGGAAGTTTACTTGTACTAGCTGCAAGGAAGTTGTATCCATGGAGAAGCAGCTTCTGTTGACTAAAACACCTTCAGTTGCGGCATTGCATTTGAAGAGATTTATGGGAGATGAGATGTCTGTTAAAAAGATCGGAAATCATGTTTTTTTCACCCTGGAATTGGACTTGCAACCTTATACATTTGGTGCTGAAAATGATAATGTAGAATTGAAATATGATCTATATGCAGTTGTGGTTCACACTGGAGATTCACCTAATTCAGGGCATTACTTTTGCTTTGTTCGCTCTGCTCCAGACAAGTGGCATAAGTTCGATGACTCAAAGGTTACCAGTGTATCCGGAGATGAAGTCTTGTCTCAAGAAGCATACATCCTGTTTTATGCACGACAAGGAACACCATGGTTTTCGAGTATTATGGAGGATGTAAACTCATCATATCAACACTCAGGTTCAGGCAACAAAGGTGATTGTGGTGGTAATGAACAAATGGAAGGTCAACACTCAGATCAAGACTCAGTTTTAGGCAACAAAGGTGATAGTGGTAGTGGTGAAGAAACTGCGGTTGATCCTATGGATGCAGATGGTGAATGTGTGGGTGACTTGCCTGTTAGGAAATCCGGAGAAAAATGCGATACCACACATAACCAAGTGCCACCTGATTAG 1638 0.4603 MSARKKITSPPPEQELPPPPQHPPPRPRQPAPPDEVAPLPDDDMFDLLPPLAIPPPPSQPSPGLPVLPLSSHSLPVDLDWFDKYKDDDGDDSDGSLHNFPTSPQSVDGFGILDRYAAETNNSSFITSLSLDDYYTSVQLASFHGDDPIPIPLSPSAKLVGAGVQNLGLTCFMGSILQCLTHTINLFQGLRSYTHDCQDDAGDFCVFCALRSHMESCFTPARSVVWPTFLAENLNQFSAGFRRDKQEDAQEFMNRALDKLQGCFPEGHPNLVQEIFGGRCVSRLRCSNCGHCSDTFESIIDLSLGIDDINTIKDALDSYFKVEKIDGKFTCTSCKEVVSMEKQLLLTKTPSVAALHLKRFMGDEMSVKKIGNHVFFTLELDLQPYTFGAENDNVELKYDLYAVVVHTGDSPNSGHYFCFVRSAPDKWHKFDDSKVTSVSGDEVLSQEAYILFYARQGTPWFSSIMEDVNSSYQHSGSGNKGDCGGNEQMEGQHSDQDSVLGNKGDSGSGEETAVDPMDADGECVGDLPVRKSGEKCDTTHNQVPPD* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2773 545 MobiDBLite consensus disorder prediction 470 545 - -
Lja4g2773 545 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 129 464 - -
Lja4g2773 545 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 129 464 - -
Lja4g2773 545 MobiDBLite consensus disorder prediction 1 68 - -
Lja4g2773 545 MobiDBLite consensus disorder prediction 488 504 - -
Lja4g2773 545 Pfam Ubiquitin carboxyl-terminal hydrolase 162 452 IPR001394 GO:0004843|GO:0016579
Lja4g2773 545 MobiDBLite consensus disorder prediction 11 37 - -
Lja4g2773 545 MobiDBLite consensus disorder prediction 49 64 - -
Lja4g2773 545 Gene3D Cysteine proteinases 158 456 - -
Lja4g2773 545 SUPERFAMILY Cysteine proteinases 160 456 IPR038765 -
Lja4g2773 545 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 397 415 IPR018200 GO:0004843|GO:0006511
Lja4g2773 545 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 161 455 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2773 Lja-Chr4 45215246 45218117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2773 157 454 Miscellaneous Gene Families AT4G31670 32.177 4.01e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2773 K11855 - lja:Lj0g3v0081459.2 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2773 4 45215246 45218117 Lja4g2773 4 45215246 45218117 ECH